miRNA display CGI


Results 121 - 140 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 97217 0.69 0.820765
Target:  5'- -cGCcGGGGCGCGAGuCGGGaCCAAGc -3'
miRNA:   3'- uaCGuUUUCGCGUUCcGCCC-GGUUUc -5'
6486 3' -53.4 NC_001847.1 + 96924 0.71 0.722759
Target:  5'- -cGUAGAGGCGCGcGGCccGGGCCu--- -3'
miRNA:   3'- uaCGUUUUCGCGUuCCG--CCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 96191 0.68 0.855224
Target:  5'- -gGCAGcGGCaaugGCGGGGCcggagucgGGGCCGGAGu -3'
miRNA:   3'- uaCGUUuUCG----CGUUCCG--------CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 96076 0.66 0.935802
Target:  5'- -aGCcggcGGCgGCAAuGGCGGaGCCGGAGu -3'
miRNA:   3'- uaCGuuu-UCG-CGUU-CCGCC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 95751 0.67 0.899423
Target:  5'- -cGCucuGGCGCGGGgggcggcGCGGGCCGc-- -3'
miRNA:   3'- uaCGuuuUCGCGUUC-------CGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 95697 0.67 0.899423
Target:  5'- -cGCucuGGCGCGGGgggcggcGCGGGCCGc-- -3'
miRNA:   3'- uaCGuuuUCGCGUUC-------CGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 95643 0.67 0.899423
Target:  5'- -cGCucuGGCGCGGGgggcggcGCGGGCCGc-- -3'
miRNA:   3'- uaCGuuuUCGCGUUC-------CGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 95342 0.66 0.924955
Target:  5'- -cGCAgGGGGCGCAgccagGGGagcgGGGCCAGGc -3'
miRNA:   3'- uaCGU-UUUCGCGU-----UCCg---CCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 95296 0.72 0.645156
Target:  5'- uUGCGGccgcuggcgccuccAGGCGCGGcgccGGCaGGGCCGAAGg -3'
miRNA:   3'- uACGUU--------------UUCGCGUU----CCG-CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 95076 0.72 0.669855
Target:  5'- gGUGCAauuaGAGGCGCu-GGCGuGGCgGGGGg -3'
miRNA:   3'- -UACGU----UUUCGCGuuCCGC-CCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 94480 0.66 0.924955
Target:  5'- uGUGCGgcaaaguacagAAGGcCGCGAGGCGcGGCgGAc- -3'
miRNA:   3'- -UACGU-----------UUUC-GCGUUCCGC-CCGgUUuc -5'
6486 3' -53.4 NC_001847.1 + 93820 0.67 0.912428
Target:  5'- -aGCGAGAGCuCGAaccggccGGCGGcGCCGGAa -3'
miRNA:   3'- uaCGUUUUCGcGUU-------CCGCC-CGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 93649 0.68 0.846925
Target:  5'- cUGCAcgcucggucauGGAGCGCGAGGCcuuuucaGCCGAGGu -3'
miRNA:   3'- uACGU-----------UUUCGCGUUCCGcc-----CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 93216 0.68 0.846925
Target:  5'- cUGCGAcGGCG-AGGGCGaGGgCGAGGg -3'
miRNA:   3'- uACGUUuUCGCgUUCCGC-CCgGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 93101 0.69 0.802363
Target:  5'- -cGCAAa---GCGGGGCGGGCUAuaAAGg -3'
miRNA:   3'- uaCGUUuucgCGUUCCGCCCGGU--UUC- -5'
6486 3' -53.4 NC_001847.1 + 92732 0.68 0.846925
Target:  5'- cGUGCucgcgcAGCGCGuGGCaGGCCAGGa -3'
miRNA:   3'- -UACGuuu---UCGCGUuCCGcCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 92450 0.71 0.680545
Target:  5'- cGUGCGAcacacGGCGCAGGGCcGGUCGAu- -3'
miRNA:   3'- -UACGUUu----UCGCGUUCCGcCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 91456 0.67 0.902771
Target:  5'- -cGCGGGAGCGUccacacgaggucgucGAgcaccugcGGCGGGCCAc-- -3'
miRNA:   3'- uaCGUUUUCGCG---------------UU--------CCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 90809 0.7 0.763593
Target:  5'- -aGCGAGAGCGgAgcgagagcaaAGGCGGGgCGAGa -3'
miRNA:   3'- uaCGUUUUCGCgU----------UCCGCCCgGUUUc -5'
6486 3' -53.4 NC_001847.1 + 90727 0.66 0.924385
Target:  5'- -cGCGAAcgcagccgcucgcGGCGCGuGGcCGGGCCccGGg -3'
miRNA:   3'- uaCGUUU-------------UCGCGUuCC-GCCCGGuuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.