miRNA display CGI


Results 141 - 160 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 90306 0.69 0.801424
Target:  5'- -gGCGAgcGCGCGuucggugGGGCcgccgGGGCCGGGGg -3'
miRNA:   3'- uaCGUUuuCGCGU-------UCCG-----CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 88398 0.68 0.83841
Target:  5'- -gGCGGgcGGGCGCGccgucggguaccAGG-GGGCCAAGGu -3'
miRNA:   3'- uaCGUU--UUCGCGU------------UCCgCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 88254 0.69 0.802363
Target:  5'- -gGCGcGGGGCGCcGGGCGGGgaCGGGGg -3'
miRNA:   3'- uaCGU-UUUCGCGuUCCGCCCg-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 87946 0.68 0.8633
Target:  5'- cUGCGGGAGCGgAAGGUGGaCCu-GGa -3'
miRNA:   3'- uACGUUUUCGCgUUCCGCCcGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 87909 0.67 0.878753
Target:  5'- uUGCAcAGGgGCGGGGCgugGGGCUggGc -3'
miRNA:   3'- uACGUuUUCgCGUUCCG---CCCGGuuUc -5'
6486 3' -53.4 NC_001847.1 + 86628 0.73 0.573263
Target:  5'- -cGCGuAAGCGUGuGGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUuUUCGCGU-UCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 86606 0.75 0.49024
Target:  5'- -cGCGGcuccGGGCGCGccucgAGGCGGGCCAc-- -3'
miRNA:   3'- uaCGUU----UUCGCGU-----UCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 86038 0.66 0.935802
Target:  5'- cUGCGcuGGUuggGCGAGGCgcuggGGGCCAcGGa -3'
miRNA:   3'- uACGUuuUCG---CGUUCCG-----CCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 86029 0.71 0.722759
Target:  5'- -gGCGGGAGCGCGAGGaggacaagccGGCCGGAc -3'
miRNA:   3'- uaCGUUUUCGCGUUCCgc--------CCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 84454 0.68 0.8633
Target:  5'- cGUGCGcgggggguggGGAGCGgGGGGgGGGgCGGGGg -3'
miRNA:   3'- -UACGU----------UUUCGCgUUCCgCCCgGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 83932 0.66 0.928872
Target:  5'- -aGCAGGGcccgcucgaagugcGCGCGGGGCcgGGGgCGGAGa -3'
miRNA:   3'- uaCGUUUU--------------CGCGUUCCG--CCCgGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 83268 0.66 0.924955
Target:  5'- -cGCAGuGGCGCAgcaccAGGuuGGCCAu-- -3'
miRNA:   3'- uaCGUUuUCGCGU-----UCCgcCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 83256 0.8 0.256895
Target:  5'- -gGcCGAAAGCGCGgcggGGGCGGGCgCAGAGg -3'
miRNA:   3'- uaC-GUUUUCGCGU----UCCGCCCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 83080 0.7 0.747469
Target:  5'- -gGCGAAGGUGCccgcccacaccuccGGGCGGGCCu--- -3'
miRNA:   3'- uaCGUUUUCGCGu-------------UCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 83049 0.68 0.83841
Target:  5'- aGUGCGcuuGGGC-CGcGGCGcGGCCGAAGa -3'
miRNA:   3'- -UACGUu--UUCGcGUuCCGC-CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 82586 0.68 0.846925
Target:  5'- cGUGCGcGAAGCGCucgcGGCGGcGCCu--- -3'
miRNA:   3'- -UACGU-UUUCGCGuu--CCGCC-CGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 82454 0.66 0.94083
Target:  5'- -gGCuccAGGCGC--GGCGGGCCc--- -3'
miRNA:   3'- uaCGuu-UUCGCGuuCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 82382 0.67 0.900098
Target:  5'- cAUGuCAAuGGU-CAGGGCGGGCCGc-- -3'
miRNA:   3'- -UAC-GUUuUCGcGUUCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 82093 0.66 0.918538
Target:  5'- -gGCc-AAGCGCGGGGCcaggcucGGaGCCGAGGc -3'
miRNA:   3'- uaCGuuUUCGCGUUCCG-------CC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 82034 0.69 0.820765
Target:  5'- -gGCAAGcAGcCGCu-GGCGGGCCGc-- -3'
miRNA:   3'- uaCGUUU-UC-GCGuuCCGCCCGGUuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.