miRNA display CGI


Results 81 - 100 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 81813 0.71 0.69119
Target:  5'- -cGCGGAGGCgGCGGGGCGcGCCGu-- -3'
miRNA:   3'- uaCGUUUUCG-CGUUCCGCcCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 134910 0.71 0.69119
Target:  5'- -gGCGucGGGGCGCGAGGCccGGGCUcgGGc -3'
miRNA:   3'- uaCGU--UUUCGCGUUCCG--CCCGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 57029 0.71 0.701782
Target:  5'- cUGCAGAacaaggAGCGCGcccuGUGGGCCGAGGc -3'
miRNA:   3'- uACGUUU------UCGCGUuc--CGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 48468 0.71 0.701782
Target:  5'- -cGUGAAAGCGCucaAAGcGCGGGUCGAGc -3'
miRNA:   3'- uaCGUUUUCGCG---UUC-CGCCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 22187 0.71 0.701782
Target:  5'- -cGCGAAuGCGCGGGcGCuGGGCCGu-- -3'
miRNA:   3'- uaCGUUUuCGCGUUC-CG-CCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 121407 0.71 0.712308
Target:  5'- -gGCAGGAGCuGCGuggaGGGCGGaGCCGuuGa -3'
miRNA:   3'- uaCGUUUUCG-CGU----UCCGCC-CGGUuuC- -5'
6486 3' -53.4 NC_001847.1 + 35571 0.71 0.712308
Target:  5'- -cGCGAcgaGGGCGCcGGGCuGGCCAAc- -3'
miRNA:   3'- uaCGUU---UUCGCGuUCCGcCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 74632 0.71 0.680545
Target:  5'- -gGCAGcgccucGCGCGAGGCGGGgCAGc- -3'
miRNA:   3'- uaCGUUuu----CGCGUUCCGCCCgGUUuc -5'
6486 3' -53.4 NC_001847.1 + 72583 0.71 0.680545
Target:  5'- -cGCGAu-GCGC-GGGCuGGGCCAAAa -3'
miRNA:   3'- uaCGUUuuCGCGuUCCG-CCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 19266 0.71 0.680545
Target:  5'- -cGCGAGccggcGGCGCAGcgucugugcGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUUU-----UCGCGUU---------CCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 104906 0.73 0.616092
Target:  5'- -cGCGGGGcccGCGCGGcGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUUUU---CGCGUU-CCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 114295 0.72 0.626855
Target:  5'- -gGCAGGGGCGUucuuGcCGGGCCAGGGa -3'
miRNA:   3'- uaCGUUUUCGCGuu--CcGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 64466 0.72 0.626855
Target:  5'- -cGCGGcGGCGC--GGgGGGCCGAAGc -3'
miRNA:   3'- uaCGUUuUCGCGuuCCgCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 115281 0.72 0.636545
Target:  5'- -gGCGGGcuaagccGGCGCccccGGGcGCGGGCCAAGGg -3'
miRNA:   3'- uaCGUUU-------UCGCG----UUC-CGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 50070 0.72 0.637622
Target:  5'- -cGCGcgcGGCGCGgacccGGGCGcGGCCAAGGc -3'
miRNA:   3'- uaCGUuu-UCGCGU-----UCCGC-CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 128215 0.72 0.648384
Target:  5'- -cGCGGAAGCaCu--GCGGGCCAGGGg -3'
miRNA:   3'- uaCGUUUUCGcGuucCGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 80020 0.72 0.659131
Target:  5'- -cGCGuuuGGCGCGGGGgGGGUCGGc- -3'
miRNA:   3'- uaCGUuu-UCGCGUUCCgCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 34602 0.72 0.669855
Target:  5'- -gGCGcuGGCGCGGcGGCGcGCCGAGGa -3'
miRNA:   3'- uaCGUuuUCGCGUU-CCGCcCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 98057 0.72 0.669855
Target:  5'- -cGCucuccGCGCucAGGCGGGCCAGu- -3'
miRNA:   3'- uaCGuuuu-CGCGu-UCCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 102698 0.71 0.722759
Target:  5'- -gGC-AGGGCGCcGGGCGGGCgGcgaAAGg -3'
miRNA:   3'- uaCGuUUUCGCGuUCCGCCCGgU---UUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.