miRNA display CGI


Results 101 - 120 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 30353 0.7 0.733123
Target:  5'- -aGCAcc-GCGCGuugcuGGCGGGCCAc-- -3'
miRNA:   3'- uaCGUuuuCGCGUu----CCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 101136 0.7 0.733123
Target:  5'- uGUGgAGAugGGCGCGGGGgcugGGGCCGGGGc -3'
miRNA:   3'- -UACgUUU--UCGCGUUCCg---CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 36528 0.7 0.753551
Target:  5'- uGUGCAcgcuGCGCGAGGCGGauUCGGAGa -3'
miRNA:   3'- -UACGUuuu-CGCGUUCCGCCc-GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 6094 0.7 0.753551
Target:  5'- -cGCGGAGGCGCGagacgcccgcgAGGCGcGGCgCGAGc -3'
miRNA:   3'- uaCGUUUUCGCGU-----------UCCGC-CCG-GUUUc -5'
6486 3' -53.4 NC_001847.1 + 32824 0.7 0.753551
Target:  5'- -cGCGAgcGCGCGAGGCccgcguGGCCGccGAGa -3'
miRNA:   3'- uaCGUUuuCGCGUUCCGc-----CCGGU--UUC- -5'
6486 3' -53.4 NC_001847.1 + 48468 0.71 0.701782
Target:  5'- -cGUGAAAGCGCucaAAGcGCGGGUCGAGc -3'
miRNA:   3'- uaCGUUUUCGCG---UUC-CGCCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 57029 0.71 0.701782
Target:  5'- cUGCAGAacaaggAGCGCGcccuGUGGGCCGAGGc -3'
miRNA:   3'- uACGUUU------UCGCGUuc--CGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 50070 0.72 0.637622
Target:  5'- -cGCGcgcGGCGCGgacccGGGCGcGGCCAAGGc -3'
miRNA:   3'- uaCGUuu-UCGCGU-----UCCGC-CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 128215 0.72 0.648384
Target:  5'- -cGCGGAAGCaCu--GCGGGCCAGGGg -3'
miRNA:   3'- uaCGUUUUCGcGuucCGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 80020 0.72 0.659131
Target:  5'- -cGCGuuuGGCGCGGGGgGGGUCGGc- -3'
miRNA:   3'- uaCGUuu-UCGCGUUCCgCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 34602 0.72 0.669855
Target:  5'- -gGCGcuGGCGCGGcGGCGcGCCGAGGa -3'
miRNA:   3'- uaCGUuuUCGCGUU-CCGCcCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 98057 0.72 0.669855
Target:  5'- -cGCucuccGCGCucAGGCGGGCCAGu- -3'
miRNA:   3'- uaCGuuuu-CGCGu-UCCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 19266 0.71 0.680545
Target:  5'- -cGCGAGccggcGGCGCAGcgucugugcGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUUU-----UCGCGUU---------CCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 72583 0.71 0.680545
Target:  5'- -cGCGAu-GCGC-GGGCuGGGCCAAAa -3'
miRNA:   3'- uaCGUUuuCGCGuUCCG-CCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 74632 0.71 0.680545
Target:  5'- -gGCAGcgccucGCGCGAGGCGGGgCAGc- -3'
miRNA:   3'- uaCGUUuu----CGCGUUCCGCCCgGUUuc -5'
6486 3' -53.4 NC_001847.1 + 66245 0.71 0.680545
Target:  5'- -cGCGGcGGCGCucGGCaugcuGGGCCGGGGa -3'
miRNA:   3'- uaCGUUuUCGCGuuCCG-----CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 52300 0.71 0.69119
Target:  5'- -cGCGAccgcGGGCGC-GGGCGGcGCCAAc- -3'
miRNA:   3'- uaCGUU----UUCGCGuUCCGCC-CGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 75031 0.71 0.69119
Target:  5'- -gGCAGAAgGCGCcgucGGUGGGCgGGAGg -3'
miRNA:   3'- uaCGUUUU-CGCGuu--CCGCCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 81813 0.71 0.69119
Target:  5'- -cGCGGAGGCgGCGGGGCGcGCCGu-- -3'
miRNA:   3'- uaCGUUUUCG-CGUUCCGCcCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 134910 0.71 0.69119
Target:  5'- -gGCGucGGGGCGCGAGGCccGGGCUcgGGc -3'
miRNA:   3'- uaCGU--UUUCGCGUUCCG--CCCGGuuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.