Results 161 - 180 of 371 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 101136 | 0.7 | 0.733123 |
Target: 5'- uGUGgAGAugGGCGCGGGGgcugGGGCCGGGGc -3' miRNA: 3'- -UACgUUU--UCGCGUUCCg---CCCGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 30353 | 0.7 | 0.733123 |
Target: 5'- -aGCAcc-GCGCGuugcuGGCGGGCCAc-- -3' miRNA: 3'- uaCGUuuuCGCGUu----CCGCCCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 101082 | 0.7 | 0.732091 |
Target: 5'- -cGCGGGGGCcgggucgGCGGGGCGGGCgGGc- -3' miRNA: 3'- uaCGUUUUCG-------CGUUCCGCCCGgUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 124970 | 0.71 | 0.722759 |
Target: 5'- -cGCAAAagccGGCGCA--GCGGGCCGGc- -3' miRNA: 3'- uaCGUUU----UCGCGUucCGCCCGGUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 96924 | 0.71 | 0.722759 |
Target: 5'- -cGUAGAGGCGCGcGGCccGGGCCu--- -3' miRNA: 3'- uaCGUUUUCGCGUuCCG--CCCGGuuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 125274 | 0.71 | 0.722759 |
Target: 5'- -gGCAGAGGCgGCAggagccgucgcAGGUGGGgCAAGGc -3' miRNA: 3'- uaCGUUUUCG-CGU-----------UCCGCCCgGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 102698 | 0.71 | 0.722759 |
Target: 5'- -gGC-AGGGCGCcGGGCGGGCgGcgaAAGg -3' miRNA: 3'- uaCGuUUUCGCGuUCCGCCCGgU---UUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 35571 | 0.71 | 0.712308 |
Target: 5'- -cGCGAcgaGGGCGCcGGGCuGGCCAAc- -3' miRNA: 3'- uaCGUU---UUCGCGuUCCGcCCGGUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 121407 | 0.71 | 0.712308 |
Target: 5'- -gGCAGGAGCuGCGuggaGGGCGGaGCCGuuGa -3' miRNA: 3'- uaCGUUUUCG-CGU----UCCGCC-CGGUuuC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 36528 | 0.7 | 0.753551 |
Target: 5'- uGUGCAcgcuGCGCGAGGCGGauUCGGAGa -3' miRNA: 3'- -UACGUuuu-CGCGUUCCGCCc-GGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 22187 | 0.71 | 0.701782 |
Target: 5'- -cGCGAAuGCGCGGGcGCuGGGCCGu-- -3' miRNA: 3'- uaCGUUUuCGCGUUC-CG-CCCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 134954 | 0.7 | 0.783278 |
Target: 5'- -gGCGGGGGCG-GGGGCGGGggccCCGGGGg -3' miRNA: 3'- uaCGUUUUCGCgUUCCGCCC----GGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 46038 | 0.7 | 0.783278 |
Target: 5'- -gGCAAAGGUuuucucGCAcucgagcuugauGGGCGGGCgAAAGa -3' miRNA: 3'- uaCGUUUUCG------CGU------------UCCGCCCGgUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 27920 | 0.7 | 0.783278 |
Target: 5'- uUGCGGAGGC-CAGGGC-GGCCGu-- -3' miRNA: 3'- uACGUUUUCGcGUUCCGcCCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 61944 | 0.7 | 0.773505 |
Target: 5'- -aGCGGcGGCGCGGcccGcGCGGGCCGAc- -3' miRNA: 3'- uaCGUUuUCGCGUU---C-CGCCCGGUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 14096 | 0.7 | 0.773505 |
Target: 5'- -cGCGGAGGCGCu-GGCGGaCCAc-- -3' miRNA: 3'- uaCGUUUUCGCGuuCCGCCcGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 120079 | 0.7 | 0.763593 |
Target: 5'- cUGCcGAGccGCGCGGGGCGGGagaUAAAGc -3' miRNA: 3'- uACGuUUU--CGCGUUCCGCCCg--GUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 59311 | 0.7 | 0.753551 |
Target: 5'- gGUGCcAGGGCGCGGcgccGGCGGcGCCGu-- -3' miRNA: 3'- -UACGuUUUCGCGUU----CCGCC-CGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 32824 | 0.7 | 0.753551 |
Target: 5'- -cGCGAgcGCGCGAGGCccgcguGGCCGccGAGa -3' miRNA: 3'- uaCGUUuuCGCGUUCCGc-----CCGGU--UUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 6094 | 0.7 | 0.753551 |
Target: 5'- -cGCGGAGGCGCGagacgcccgcgAGGCGcGGCgCGAGc -3' miRNA: 3'- uaCGUUUUCGCGU-----------UCCGC-CCG-GUUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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