miRNA display CGI


Results 61 - 80 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 53590 0.66 0.919135
Target:  5'- -cGCAGcuGCGCGGGGCcGGCgAGc- -3'
miRNA:   3'- uaCGUUuuCGCGUUCCGcCCGgUUuc -5'
6486 3' -53.4 NC_001847.1 + 82093 0.66 0.918538
Target:  5'- -gGCc-AAGCGCGGGGCcaggcucGGaGCCGAGGc -3'
miRNA:   3'- uaCGuuUUCGCGUUCCG-------CC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 81878 0.66 0.940339
Target:  5'- -cGCcuGGGCGCGcagcgccccgccgAGGCGGcGCCGcAGc -3'
miRNA:   3'- uaCGuuUUCGCGU-------------UCCGCC-CGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 42492 0.66 0.935802
Target:  5'- -cGCcGAAGCGCu--GCGGGCgAAAc -3'
miRNA:   3'- uaCGuUUUCGCGuucCGCCCGgUUUc -5'
6486 3' -53.4 NC_001847.1 + 96076 0.66 0.935802
Target:  5'- -aGCcggcGGCgGCAAuGGCGGaGCCGGAGu -3'
miRNA:   3'- uaCGuuu-UCG-CGUU-CCGCC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 32941 0.66 0.935802
Target:  5'- -gGCGGcGGgGCcGGGgGGGCgGAGGa -3'
miRNA:   3'- uaCGUUuUCgCGuUCCgCCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 124644 0.66 0.930511
Target:  5'- -cGCAGcAGCGCGGGGCc-GUCGGGGa -3'
miRNA:   3'- uaCGUUuUCGCGUUCCGccCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 29638 0.66 0.930511
Target:  5'- -gGCcGGGGCGCcgcGGGCGGacCCGGAGg -3'
miRNA:   3'- uaCGuUUUCGCGu--UCCGCCc-GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 95342 0.66 0.924955
Target:  5'- -cGCAgGGGGCGCAgccagGGGagcgGGGCCAGGc -3'
miRNA:   3'- uaCGU-UUUCGCGU-----UCCg---CCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 25371 0.66 0.924955
Target:  5'- -gGCAGGGG-GCGGcGGCaGGGCgGAGGg -3'
miRNA:   3'- uaCGUUUUCgCGUU-CCG-CCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 97619 0.68 0.871145
Target:  5'- cGUGCAccgucgAGGGUGCGuccAGGCGGcgcGCCAAAa -3'
miRNA:   3'- -UACGU------UUUCGCGU---UCCGCC---CGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 47720 0.67 0.878753
Target:  5'- -aGCAGcucuucGAGCGCGgcGGGCGgGGCCc--- -3'
miRNA:   3'- uaCGUU------UUCGCGU--UCCGC-CCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 93820 0.67 0.912428
Target:  5'- -aGCGAGAGCuCGAaccggccGGCGGcGCCGGAa -3'
miRNA:   3'- uaCGUUUUCGcGUU-------CCGCC-CGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 42733 0.67 0.906704
Target:  5'- -gGCGGccGCGCGGgcGGCGGGgCGGAc -3'
miRNA:   3'- uaCGUUuuCGCGUU--CCGCCCgGUUUc -5'
6486 3' -53.4 NC_001847.1 + 15386 0.67 0.900098
Target:  5'- -gGCGGucGGCGuCGGGGCugGGGCCGGGu -3'
miRNA:   3'- uaCGUUu-UCGC-GUUCCG--CCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 82382 0.67 0.900098
Target:  5'- cAUGuCAAuGGU-CAGGGCGGGCCGc-- -3'
miRNA:   3'- -UAC-GUUuUCGcGUUCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 95697 0.67 0.899423
Target:  5'- -cGCucuGGCGCGGGgggcggcGCGGGCCGc-- -3'
miRNA:   3'- uaCGuuuUCGCGUUC-------CGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 123489 0.67 0.893234
Target:  5'- -gGCugGGGCcgccgcaaGCGGGGCcgGGGCCAGGGc -3'
miRNA:   3'- uaCGuuUUCG--------CGUUCCG--CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 30360 0.67 0.886118
Target:  5'- -cGgGGAGGCGCu-GGCGGcGCCGc-- -3'
miRNA:   3'- uaCgUUUUCGCGuuCCGCC-CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 33133 0.67 0.886118
Target:  5'- cUGCGGcGGGUGguGGaGUGGGUCGAGGg -3'
miRNA:   3'- uACGUU-UUCGCguUC-CGCCCGGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.