miRNA display CGI


Results 101 - 120 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 59 0.68 0.846925
Target:  5'- -gGCGGAaauuucGGCGC--GGCGGGCCcGGGc -3'
miRNA:   3'- uaCGUUU------UCGCGuuCCGCCCGGuUUC- -5'
6486 3' -53.4 NC_001847.1 + 132499 0.69 0.829687
Target:  5'- -gGCGAAGGCGCcgcaagcggcGAcGGCGGucccGCCGAAGc -3'
miRNA:   3'- uaCGUUUUCGCG----------UU-CCGCC----CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 82034 0.69 0.820765
Target:  5'- -gGCAAGcAGcCGCu-GGCGGGCCGc-- -3'
miRNA:   3'- uaCGUUU-UC-GCGuuCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 103027 0.69 0.811654
Target:  5'- -aGCGccGGCGgcGGGCGGGCCGcAGc -3'
miRNA:   3'- uaCGUuuUCGCguUCCGCCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 93101 0.69 0.802363
Target:  5'- -cGCAAa---GCGGGGCGGGCUAuaAAGg -3'
miRNA:   3'- uaCGUUuucgCGUUCCGCCCGGU--UUC- -5'
6486 3' -53.4 NC_001847.1 + 14156 0.67 0.900098
Target:  5'- -cGCAGcGGCGgcCGGGGCGGccgcGCUAAAGg -3'
miRNA:   3'- uaCGUUuUCGC--GUUCCGCC----CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 125465 0.67 0.900098
Target:  5'- -gGCGGGucGGCgGCAGcucgcGGCGGGCgCGAGGa -3'
miRNA:   3'- uaCGUUU--UCG-CGUU-----CCGCCCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 81878 0.66 0.940339
Target:  5'- -cGCcuGGGCGCGcagcgccccgccgAGGCGGcGCCGcAGc -3'
miRNA:   3'- uaCGuuUUCGCGU-------------UCCGCC-CGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 42492 0.66 0.935802
Target:  5'- -cGCcGAAGCGCu--GCGGGCgAAAc -3'
miRNA:   3'- uaCGuUUUCGCGuucCGCCCGgUUUc -5'
6486 3' -53.4 NC_001847.1 + 96076 0.66 0.935802
Target:  5'- -aGCcggcGGCgGCAAuGGCGGaGCCGGAGu -3'
miRNA:   3'- uaCGuuu-UCG-CGUU-CCGCC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 32941 0.66 0.935802
Target:  5'- -gGCGGcGGgGCcGGGgGGGCgGAGGa -3'
miRNA:   3'- uaCGUUuUCgCGuUCCgCCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 124644 0.66 0.930511
Target:  5'- -cGCAGcAGCGCGGGGCc-GUCGGGGa -3'
miRNA:   3'- uaCGUUuUCGCGUUCCGccCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 29638 0.66 0.930511
Target:  5'- -gGCcGGGGCGCcgcGGGCGGacCCGGAGg -3'
miRNA:   3'- uaCGuUUUCGCGu--UCCGCCc-GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 95342 0.66 0.924955
Target:  5'- -cGCAgGGGGCGCAgccagGGGagcgGGGCCAGGc -3'
miRNA:   3'- uaCGU-UUUCGCGU-----UCCg---CCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 25371 0.66 0.924955
Target:  5'- -gGCAGGGG-GCGGcGGCaGGGCgGAGGg -3'
miRNA:   3'- uaCGUUUUCgCGUU-CCG-CCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 27858 0.66 0.919135
Target:  5'- -cGCcAGGGaCGCGGGG-GGcGCCGAGGa -3'
miRNA:   3'- uaCGuUUUC-GCGUUCCgCC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 109746 0.66 0.919135
Target:  5'- -aGCucGAGgGCGGGGCgaucgagucuauGGGCCAGu- -3'
miRNA:   3'- uaCGuuUUCgCGUUCCG------------CCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 134456 0.67 0.913051
Target:  5'- uUGCGGcAGgGCAagauggcauAGGCGcGGCCAAc- -3'
miRNA:   3'- uACGUUuUCgCGU---------UCCGC-CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 125793 0.67 0.906704
Target:  5'- -gGCA--AGCGagucGGCGGGCCGGc- -3'
miRNA:   3'- uaCGUuuUCGCguu-CCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 105324 0.67 0.90077
Target:  5'- uUGCGGAccugcgucgucgugGGCGcCGGGGCGcucgcguccacaaacGGCCAGAGc -3'
miRNA:   3'- uACGUUU--------------UCGC-GUUCCGC---------------CCGGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.