miRNA display CGI


Results 121 - 140 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 101906 0.66 0.930511
Target:  5'- -aGCGGAGGCGCcgcggcgcccGGcGCGGcGCCAAGc -3'
miRNA:   3'- uaCGUUUUCGCGu---------UC-CGCC-CGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 66490 0.66 0.930511
Target:  5'- -cGCAGGGGCgGgGAGGCggugaaguuuGGGCUGGAGc -3'
miRNA:   3'- uaCGUUUUCG-CgUUCCG----------CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 22629 0.69 0.820765
Target:  5'- -cGCGcAGGGCGCGuccggggaGGGCGGGCUu--- -3'
miRNA:   3'- uaCGU-UUUCGCGU--------UCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 29567 0.69 0.824357
Target:  5'- -gGCGGGGGCGCcGGcGCcggcgccgccgcgccGGGCCGGGGg -3'
miRNA:   3'- uaCGUUUUCGCGuUC-CG---------------CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 23271 0.68 0.83841
Target:  5'- cUGCAAugGAGCGCugcacGGGgGGGCgGAGc -3'
miRNA:   3'- uACGUU--UUCGCGu----UCCgCCCGgUUUc -5'
6486 3' -53.4 NC_001847.1 + 25996 0.66 0.919135
Target:  5'- -gGCGGgcGGGCGCGcAGGCgcgcacaaaaaGGGCCAAc- -3'
miRNA:   3'- uaCGUU--UUCGCGU-UCCG-----------CCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 125813 0.67 0.913051
Target:  5'- -nGCGGgcGUGCAgcucaaagcGGGuCGGGCCGAGu -3'
miRNA:   3'- uaCGUUuuCGCGU---------UCC-GCCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 93820 0.67 0.912428
Target:  5'- -aGCGAGAGCuCGAaccggccGGCGGcGCCGGAa -3'
miRNA:   3'- uaCGUUUUCGcGUU-------CCGCC-CGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 24341 0.67 0.906704
Target:  5'- gAUGUccAAGUGgAGGGgGGGCCcGAGc -3'
miRNA:   3'- -UACGuuUUCGCgUUCCgCCCGGuUUC- -5'
6486 3' -53.4 NC_001847.1 + 15386 0.67 0.900098
Target:  5'- -gGCGGucGGCGuCGGGGCugGGGCCGGGu -3'
miRNA:   3'- uaCGUUu-UCGC-GUUCCG--CCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 20899 0.67 0.900098
Target:  5'- -gGCAGcGAGCGCGucGCGGGCgAGc- -3'
miRNA:   3'- uaCGUU-UUCGCGUucCGCCCGgUUuc -5'
6486 3' -53.4 NC_001847.1 + 95697 0.67 0.899423
Target:  5'- -cGCucuGGCGCGGGgggcggcGCGGGCCGc-- -3'
miRNA:   3'- uaCGuuuUCGCGUUC-------CGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 123605 0.67 0.893234
Target:  5'- uUGCAAGcccAGC-CAAGGCGgcaaacucGGCCGGGGc -3'
miRNA:   3'- uACGUUU---UCGcGUUCCGC--------CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 30360 0.67 0.886118
Target:  5'- -cGgGGAGGCGCu-GGCGGcGCCGc-- -3'
miRNA:   3'- uaCgUUUUCGCGuuCCGCC-CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 27801 0.67 0.886118
Target:  5'- -cGCGGGGGC-CAccgaGGGCGccgaGGCCGAAGa -3'
miRNA:   3'- uaCGUUUUCGcGU----UCCGC----CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 47720 0.67 0.878753
Target:  5'- -aGCAGcucuucGAGCGCGgcGGGCGgGGCCc--- -3'
miRNA:   3'- uaCGUU------UUCGCGU--UCCGC-CCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 30981 0.68 0.871145
Target:  5'- -cGCAAGGacauggccGCGCAGGGCGcGGCgCuGGGg -3'
miRNA:   3'- uaCGUUUU--------CGCGUUCCGC-CCG-GuUUC- -5'
6486 3' -53.4 NC_001847.1 + 87946 0.68 0.8633
Target:  5'- cUGCGGGAGCGgAAGGUGGaCCu-GGa -3'
miRNA:   3'- uACGUUUUCGCgUUCCGCCcGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 26385 0.68 0.855224
Target:  5'- -gGCuAGAAGCaGC-GGGCGGGCCc--- -3'
miRNA:   3'- uaCG-UUUUCG-CGuUCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 27894 0.68 0.846925
Target:  5'- -cGCGGAGuGCGcCGAGGCcgaggGGGCgGAGGg -3'
miRNA:   3'- uaCGUUUU-CGC-GUUCCG-----CCCGgUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.