miRNA display CGI


Results 141 - 160 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 19427 0.72 0.663424
Target:  5'- -aGCGGGAGCGCcaAAGGCcgcgcgcccgcugccGGGCCAGc- -3'
miRNA:   3'- uaCGUUUUCGCG--UUCCG---------------CCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 59210 0.72 0.669855
Target:  5'- cGUGUGGcGGCGCAcGGCGGcGCCAc-- -3'
miRNA:   3'- -UACGUUuUCGCGUuCCGCC-CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 111279 0.69 0.811654
Target:  5'- cUGCGAAAgcacuuuacGCGCGAGGCcagccggcucgGGGCCGu-- -3'
miRNA:   3'- uACGUUUU---------CGCGUUCCG-----------CCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 82034 0.69 0.820765
Target:  5'- -gGCAAGcAGcCGCu-GGCGGGCCGc-- -3'
miRNA:   3'- uaCGUUU-UC-GCGuuCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 88398 0.68 0.83841
Target:  5'- -gGCGGgcGGGCGCGccgucggguaccAGG-GGGCCAAGGu -3'
miRNA:   3'- uaCGUU--UUCGCGU------------UCCgCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 27894 0.68 0.846925
Target:  5'- -cGCGGAGuGCGcCGAGGCcgaggGGGCgGAGGg -3'
miRNA:   3'- uaCGUUUU-CGC-GUUCCG-----CCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 96191 0.68 0.855224
Target:  5'- -gGCAGcGGCaaugGCGGGGCcggagucgGGGCCGGAGu -3'
miRNA:   3'- uaCGUUuUCG----CGUUCCG--------CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 87946 0.68 0.8633
Target:  5'- cUGCGGGAGCGgAAGGUGGaCCu-GGa -3'
miRNA:   3'- uACGUUUUCGCgUUCCGCCcGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 28737 0.68 0.871145
Target:  5'- cUGCA-GAGCGCGAagcucGCGGGCCc--- -3'
miRNA:   3'- uACGUuUUCGCGUUc----CGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 104376 0.68 0.871145
Target:  5'- -cGCAGAcgcgcGGCGCugcaGCGGGCCGcGGu -3'
miRNA:   3'- uaCGUUU-----UCGCGuuc-CGCCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 93101 0.69 0.802363
Target:  5'- -cGCAAa---GCGGGGCGGGCUAuaAAGg -3'
miRNA:   3'- uaCGUUuucgCGUUCCGCCCGGU--UUC- -5'
6486 3' -53.4 NC_001847.1 + 37022 0.69 0.799541
Target:  5'- cGUGCGGAgcggGGCGCcGGGCucgcacucuagccuGGGCUggGGg -3'
miRNA:   3'- -UACGUUU----UCGCGuUCCG--------------CCCGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 32097 0.71 0.69119
Target:  5'- -gGCGucGGGGCGCGAGGCccGGGCUcgGGc -3'
miRNA:   3'- uaCGU--UUUCGCGUUCCG--CCCGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 18987 0.71 0.701782
Target:  5'- aAUGCGAAaguuuAGCGCAcGGGCGGcGCCc--- -3'
miRNA:   3'- -UACGUUU-----UCGCGU-UCCGCC-CGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 125517 0.71 0.701782
Target:  5'- -gGCGGGccGGCGCGGcGGCGGGCgCAGc- -3'
miRNA:   3'- uaCGUUU--UCGCGUU-CCGCCCG-GUUuc -5'
6486 3' -53.4 NC_001847.1 + 134624 0.71 0.712308
Target:  5'- -aGUAGAacAGCGUgggcugGGGGCGGGCCGGc- -3'
miRNA:   3'- uaCGUUU--UCGCG------UUCCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 83080 0.7 0.747469
Target:  5'- -gGCGAAGGUGCccgcccacaccuccGGGCGGGCCu--- -3'
miRNA:   3'- uaCGUUUUCGCGu-------------UCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 35297 0.7 0.753551
Target:  5'- gGUGCGugGGCG-GGGGCGGGCaacgCAAAGc -3'
miRNA:   3'- -UACGUuuUCGCgUUCCGCCCG----GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 48473 0.7 0.773505
Target:  5'- -gGCAAAAGCGCGcGGCGaGCUccgaGAAGa -3'
miRNA:   3'- uaCGUUUUCGCGUuCCGCcCGG----UUUC- -5'
6486 3' -53.4 NC_001847.1 + 28785 0.69 0.792901
Target:  5'- cUGCAGcGGCGCGugcaGGGCugccgGGGCCAcAGc -3'
miRNA:   3'- uACGUUuUCGCGU----UCCG-----CCCGGUuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.