miRNA display CGI


Results 81 - 100 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 40275 0.66 0.999574
Target:  5'- uCCUCGaaGGUGCGGAuguugacaaagguGUACAcggGUAGCg -3'
miRNA:   3'- -GGGGCgaCCGCGUUUu------------UAUGU---UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 14765 0.66 0.999389
Target:  5'- gCCCGC-GGCGUGGuAGcGCAGcAGCu -3'
miRNA:   3'- gGGGCGaCCGCGUUuUUaUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 73680 0.66 0.999489
Target:  5'- gCCCGCgccaucgaugaaGGCGCGGcccggcgcGUGCAGUAcGCg -3'
miRNA:   3'- gGGGCGa-----------CCGCGUUuu------UAUGUUAU-CG- -5'
6487 3' -47.4 NC_001847.1 + 93556 0.66 0.999612
Target:  5'- gCCaCGCUGGCcucgacGCAAA---GCAcgGGCc -3'
miRNA:   3'- gGG-GCGACCG------CGUUUuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 72621 0.66 0.999389
Target:  5'- uUCCC-CUGGCuacggGCAAAAGggcgGCuGUGGCc -3'
miRNA:   3'- -GGGGcGACCG-----CGUUUUUa---UGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 53575 0.67 0.999138
Target:  5'- gCCgCGCUGG-GCGAcguGGAUgccuuuuugcgggccACGGUGGCg -3'
miRNA:   3'- -GGgGCGACCgCGUU---UUUA---------------UGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 48520 0.67 0.998704
Target:  5'- gCCCGCccacacgcuuacgcGGCGCGGccAGcaGCAAUGGCc -3'
miRNA:   3'- gGGGCGa-------------CCGCGUU--UUuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 78403 0.67 0.999063
Target:  5'- aCCCCGCcgcugcgGGCGCGc---UGC--UGGCg -3'
miRNA:   3'- -GGGGCGa------CCGCGUuuuuAUGuuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 101761 0.67 0.999043
Target:  5'- aCCCCacggccgccaGgaGGCGCAgacugcugaggguGAGGUGCGAggGGCc -3'
miRNA:   3'- -GGGG----------CgaCCGCGU-------------UUUUAUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 108255 0.67 0.999063
Target:  5'- cCCCUGCgUGuuGCccGAcgGCGGUGGCg -3'
miRNA:   3'- -GGGGCG-ACcgCGuuUUuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 28878 0.67 0.999241
Target:  5'- --gCGCUGGgGCGAGu-UGCAG-AGCa -3'
miRNA:   3'- gggGCGACCgCGUUUuuAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 77494 0.67 0.999241
Target:  5'- gCCCGCcGGCcCGAGu---CGGUGGCc -3'
miRNA:   3'- gGGGCGaCCGcGUUUuuauGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 118241 0.67 0.9983
Target:  5'- cUCCCGCccGCGCGAGAccgGCGAcgcAGCg -3'
miRNA:   3'- -GGGGCGacCGCGUUUUua-UGUUa--UCG- -5'
6487 3' -47.4 NC_001847.1 + 34542 0.67 0.9983
Target:  5'- gCCCGCcgGGCGCuuGGGgcCAcaGGCc -3'
miRNA:   3'- gGGGCGa-CCGCGuuUUUauGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 32253 0.67 0.9983
Target:  5'- -gCCGCUGaCGCAGAcgcGUGC-GUGGCu -3'
miRNA:   3'- ggGGCGACcGCGUUUu--UAUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 66875 0.67 0.999063
Target:  5'- gUCCCGCUcGCGCGcgGGUACucgucGGUc -3'
miRNA:   3'- -GGGGCGAcCGCGUuuUUAUGuua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 6374 0.67 0.999063
Target:  5'- -gCCGCUgcGGCaGCAGAAGgcgGCAAgcGCc -3'
miRNA:   3'- ggGGCGA--CCG-CGUUUUUa--UGUUauCG- -5'
6487 3' -47.4 NC_001847.1 + 115089 0.67 0.999241
Target:  5'- aCgCCGCUccCGCAAAcGUACAGUccAGCu -3'
miRNA:   3'- -GgGGCGAccGCGUUUuUAUGUUA--UCG- -5'
6487 3' -47.4 NC_001847.1 + 77656 0.67 0.999241
Target:  5'- gCCUucgaCGCgGGCGCcGAGGUACugcUGGCc -3'
miRNA:   3'- -GGG----GCGaCCGCGuUUUUAUGuu-AUCG- -5'
6487 3' -47.4 NC_001847.1 + 105594 0.67 0.9983
Target:  5'- cCCCCGCcGGCGgccucCAGGGccGCGAgcGCg -3'
miRNA:   3'- -GGGGCGaCCGC-----GUUUUuaUGUUauCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.