miRNA display CGI


Results 121 - 140 of 410 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 40301 0.67 0.998625
Target:  5'- uCCCC-CUcGGCGCAGAcuccgacgccacCGAUAGCu -3'
miRNA:   3'- -GGGGcGA-CCGCGUUUuuau--------GUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 85963 0.67 0.998779
Target:  5'- uCCCCGCUugcagcggacgcccGGCGCGug---ACcGUGGUc -3'
miRNA:   3'- -GGGGCGA--------------CCGCGUuuuuaUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 48520 0.67 0.998704
Target:  5'- gCCCGCccacacgcuuacgcGGCGCGGccAGcaGCAAUGGCc -3'
miRNA:   3'- gGGGCGa-------------CCGCGUU--UUuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 133390 0.67 0.998598
Target:  5'- uUCCGC-GGCGCGguGGAGUACcucuGCg -3'
miRNA:   3'- gGGGCGaCCGCGU--UUUUAUGuuauCG- -5'
6487 3' -47.4 NC_001847.1 + 77036 0.67 0.998598
Target:  5'- uCCgCCGCgc-CGCAGAAGUA--GUAGCg -3'
miRNA:   3'- -GG-GGCGaccGCGUUUUUAUguUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 116749 0.67 0.998598
Target:  5'- gCCCCGCgGGCccgcagGCGAGGAcGCcgaGGCa -3'
miRNA:   3'- -GGGGCGaCCG------CGUUUUUaUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 91421 0.67 0.999003
Target:  5'- gCCCUGCUGGgaucucgcggacuuCGCAgacGAAGcGCGggAGCg -3'
miRNA:   3'- -GGGGCGACC--------------GCGU---UUUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 77235 0.67 0.998598
Target:  5'- gCCCGgacUUGGCGCGGuc--GCGcgGGCg -3'
miRNA:   3'- gGGGC---GACCGCGUUuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 52606 0.67 0.998598
Target:  5'- gCCCGCgggcGGCGCcuuuGAcuucggcgcGUGCGcgAGCg -3'
miRNA:   3'- gGGGCGa---CCGCGuu--UU---------UAUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 115089 0.67 0.999241
Target:  5'- aCgCCGCUccCGCAAAcGUACAGUccAGCu -3'
miRNA:   3'- -GgGGCGAccGCGUUUuUAUGUUA--UCG- -5'
6487 3' -47.4 NC_001847.1 + 77656 0.67 0.999241
Target:  5'- gCCUucgaCGCgGGCGCcGAGGUACugcUGGCc -3'
miRNA:   3'- -GGG----GCGaCCGCGuUUUUAUGuu-AUCG- -5'
6487 3' -47.4 NC_001847.1 + 77494 0.67 0.999241
Target:  5'- gCCCGCcGGCcCGAGu---CGGUGGCc -3'
miRNA:   3'- gGGGCGaCCGcGUUUuuauGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 28878 0.67 0.999241
Target:  5'- --gCGCUGGgGCGAGu-UGCAG-AGCa -3'
miRNA:   3'- gggGCGACCgCGUUUuuAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 53575 0.67 0.999138
Target:  5'- gCCgCGCUGG-GCGAcguGGAUgccuuuuugcgggccACGGUGGCg -3'
miRNA:   3'- -GGgGCGACCgCGUU---UUUA---------------UGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 6374 0.67 0.999063
Target:  5'- -gCCGCUgcGGCaGCAGAAGgcgGCAAgcGCc -3'
miRNA:   3'- ggGGCGA--CCG-CGUUUUUa--UGUUauCG- -5'
6487 3' -47.4 NC_001847.1 + 78403 0.67 0.999063
Target:  5'- aCCCCGCcgcugcgGGCGCGc---UGC--UGGCg -3'
miRNA:   3'- -GGGGCGa------CCGCGUuuuuAUGuuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 66875 0.67 0.999063
Target:  5'- gUCCCGCUcGCGCGcgGGUACucgucGGUc -3'
miRNA:   3'- -GGGGCGAcCGCGUuuUUAUGuua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 108255 0.67 0.999063
Target:  5'- cCCCUGCgUGuuGCccGAcgGCGGUGGCg -3'
miRNA:   3'- -GGGGCG-ACcgCGuuUUuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 24082 0.67 0.99885
Target:  5'- gCCCGC-GGCaGCGAGAGgaccACGcccucGUAGCc -3'
miRNA:   3'- gGGGCGaCCG-CGUUUUUa---UGU-----UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 8641 0.67 0.99885
Target:  5'- gCCgCUGCggacucgGGCGCccag--ACGAUGGCg -3'
miRNA:   3'- -GG-GGCGa------CCGCGuuuuuaUGUUAUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.