miRNA display CGI


Results 61 - 80 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 45641 0.72 0.963566
Target:  5'- gCCUCGCUGcGCaGCAGGAGUuu-GUAGUa -3'
miRNA:   3'- -GGGGCGAC-CG-CGUUUUUAuguUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 85855 0.72 0.967037
Target:  5'- gCgUCGCUGGCGCGGAuguuAUACGGc-GCg -3'
miRNA:   3'- -GgGGCGACCGCGUUUu---UAUGUUauCG- -5'
6487 3' -47.4 NC_001847.1 + 113434 0.72 0.967037
Target:  5'- gCCCUGCUGGCGCu--GGUcCuccGGCu -3'
miRNA:   3'- -GGGGCGACCGCGuuuUUAuGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 34468 0.72 0.970267
Target:  5'- -gCCGCcGGCgGCGAGGAUGCGGacGGCg -3'
miRNA:   3'- ggGGCGaCCG-CGUUUUUAUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 43230 0.72 0.970267
Target:  5'- gCCCGgUGGCGguGGGGgcGCGcgGGCg -3'
miRNA:   3'- gGGGCgACCGCguUUUUa-UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 37409 0.72 0.970267
Target:  5'- gCgUGCUGGCGCGcauGUGCAuuccgGGCg -3'
miRNA:   3'- gGgGCGACCGCGUuuuUAUGUua---UCG- -5'
6487 3' -47.4 NC_001847.1 + 117369 0.72 0.970267
Target:  5'- gCCCCGCcgaagGaGCGCAAGugGAUGCucugcgAGCg -3'
miRNA:   3'- -GGGGCGa----C-CGCGUUU--UUAUGuua---UCG- -5'
6487 3' -47.4 NC_001847.1 + 95695 0.72 0.963566
Target:  5'- -gCCGCucUGGCGCGGGGGgcgGCGcgGGCc -3'
miRNA:   3'- ggGGCG--ACCGCGUUUUUa--UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 95641 0.72 0.963566
Target:  5'- -gCCGCucUGGCGCGGGGGgcgGCGcgGGCc -3'
miRNA:   3'- ggGGCG--ACCGCGUUUUUa--UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 37111 0.72 0.959848
Target:  5'- gCCCGCUGGUGUuc--AUGCucuggGGCg -3'
miRNA:   3'- gGGGCGACCGCGuuuuUAUGuua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 45587 0.72 0.967037
Target:  5'- cCCUCGCcgGGCGCGAcgaucacguaggGGAUGCGGUccuugacguuggGGCg -3'
miRNA:   3'- -GGGGCGa-CCGCGUU------------UUUAUGUUA------------UCG- -5'
6487 3' -47.4 NC_001847.1 + 53816 0.72 0.959848
Target:  5'- gCCCC-CUGGCGCGccGGaGCGggGGCg -3'
miRNA:   3'- -GGGGcGACCGCGUuuUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 19147 0.72 0.953794
Target:  5'- cCCCCGgaGGCGCuuuuuuuuuugucccCGAUGGCa -3'
miRNA:   3'- -GGGGCgaCCGCGuuuuuau--------GUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 85791 0.72 0.959074
Target:  5'- aCCaCCGCgacguuUGGCGCGAAugccgucuccACAGUAGCc -3'
miRNA:   3'- -GG-GGCG------ACCGCGUUUuua-------UGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 29721 0.71 0.980939
Target:  5'- -aCUGC-GGCGCGGGA--GCGGUGGCc -3'
miRNA:   3'- ggGGCGaCCGCGUUUUuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 34049 0.71 0.980939
Target:  5'- gCCCCGC-GGCGCGcgcguuuuucGAGggGCAcgcggagcgcGUGGCg -3'
miRNA:   3'- -GGGGCGaCCGCGU----------UUUuaUGU----------UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 90010 0.71 0.980939
Target:  5'- aCCCCGCagaaGGCGCcGAGcUGCAccuGCg -3'
miRNA:   3'- -GGGGCGa---CCGCGuUUUuAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 28056 0.71 0.982883
Target:  5'- gCgCUGCUGGCGgAAAAccugcccggucugGUGCuGUGGCg -3'
miRNA:   3'- -GgGGCGACCGCgUUUU-------------UAUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 6110 0.71 0.983089
Target:  5'- gCCCGCgaGGCGCG-----GCGcgAGCg -3'
miRNA:   3'- gGGGCGa-CCGCGUuuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 66544 0.71 0.972683
Target:  5'- gCCCGCUGGaCGCGugcgccuacUGCGGcAGCg -3'
miRNA:   3'- gGGGCGACC-GCGUuuuu-----AUGUUaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.