miRNA display CGI


Results 81 - 100 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 134606 0.71 0.976036
Target:  5'- cCCCCGgaGaGCGCAucuAGUAgAAcAGCg -3'
miRNA:   3'- -GGGGCgaC-CGCGUuu-UUAUgUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 105895 0.71 0.973264
Target:  5'- gUCCGUgcgcGGcCGCGGGGccAUGCAGUGGCg -3'
miRNA:   3'- gGGGCGa---CC-GCGUUUU--UAUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 132714 0.71 0.973264
Target:  5'- -gCgGCUGGCGCGAAGcuugGCGA-AGCg -3'
miRNA:   3'- ggGgCGACCGCGUUUUua--UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 111090 0.71 0.973264
Target:  5'- gCCCgGCU-GCGCGAGAAggucgcgcgGCAcgGGCu -3'
miRNA:   3'- -GGGgCGAcCGCGUUUUUa--------UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 101549 0.71 0.980939
Target:  5'- gUCCaGCUGGCGCAGGAcguCGucGGCa -3'
miRNA:   3'- -GGGgCGACCGCGUUUUuauGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 16314 0.71 0.980939
Target:  5'- aCCCGC-GGCGCGGGuGUAgGcaAGCu -3'
miRNA:   3'- gGGGCGaCCGCGUUUuUAUgUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 50040 0.71 0.983089
Target:  5'- gCCCGCggGGCGCGGug--GCGGccGCg -3'
miRNA:   3'- gGGGCGa-CCGCGUUuuuaUGUUauCG- -5'
6487 3' -47.4 NC_001847.1 + 6110 0.71 0.983089
Target:  5'- gCCCGCgaGGCGCG-----GCGcgAGCg -3'
miRNA:   3'- gGGGCGa-CCGCGUuuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 28056 0.71 0.982883
Target:  5'- gCgCUGCUGGCGgAAAAccugcccggucugGUGCuGUGGCg -3'
miRNA:   3'- -GgGGCGACCGCgUUUU-------------UAUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 90010 0.71 0.980939
Target:  5'- aCCCCGCagaaGGCGCcGAGcUGCAccuGCg -3'
miRNA:   3'- -GGGGCGa---CCGCGuUUUuAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 34049 0.71 0.980939
Target:  5'- gCCCCGC-GGCGCGcgcguuuuucGAGggGCAcgcggagcgcGUGGCg -3'
miRNA:   3'- -GGGGCGaCCGCGU----------UUUuaUGU----------UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 29721 0.71 0.980939
Target:  5'- -aCUGC-GGCGCGGGA--GCGGUGGCc -3'
miRNA:   3'- ggGGCGaCCGCGUUUUuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 4549 0.71 0.978591
Target:  5'- gCCCGCgggUGGCGCGgcgugGAAGUGgaAGUGGUg -3'
miRNA:   3'- gGGGCG---ACCGCGU-----UUUUAUg-UUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 134794 0.71 0.978591
Target:  5'- gCCCCGg-GGCGCGAAgcccggGAgggACGcgGGCg -3'
miRNA:   3'- -GGGGCgaCCGCGUUU------UUa--UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 29252 0.71 0.976036
Target:  5'- gCCCCGCggccGCGCAcgGAcUAC-GUGGCg -3'
miRNA:   3'- -GGGGCGac--CGCGUuuUU-AUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 66544 0.71 0.972683
Target:  5'- gCCCGCUGGaCGCGugcgccuacUGCGGcAGCg -3'
miRNA:   3'- gGGGCGACC-GCGUuuuu-----AUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 98204 0.71 0.980939
Target:  5'- cCCCCGCUcGGCcaGCGAGAA-GCAc-AGCg -3'
miRNA:   3'- -GGGGCGA-CCG--CGUUUUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 96880 0.71 0.980939
Target:  5'- gCCCGC-GcGUGCGGAAAUAaauuguCGGUGGCg -3'
miRNA:   3'- gGGGCGaC-CGCGUUUUUAU------GUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 52380 0.7 0.988449
Target:  5'- gCgCGCUGGCGCAGAcg-GCcGUcuacGGCg -3'
miRNA:   3'- gGgGCGACCGCGUUUuuaUGuUA----UCG- -5'
6487 3' -47.4 NC_001847.1 + 54539 0.7 0.988449
Target:  5'- gUCCGggGGCGCAGAcg-GCGggGGCg -3'
miRNA:   3'- gGGGCgaCCGCGUUUuuaUGUuaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.