miRNA display CGI


Results 101 - 120 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 130177 0.7 0.985051
Target:  5'- gCCCCaGCUgcccccccGGCGCGc----GCGAUAGCg -3'
miRNA:   3'- -GGGG-CGA--------CCGCGUuuuuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 123595 0.7 0.985051
Target:  5'- aCCCGCUgGGCGCAcuccAGAcGCGAacgcAGCa -3'
miRNA:   3'- gGGGCGA-CCGCGUu---UUUaUGUUa---UCG- -5'
6487 3' -47.4 NC_001847.1 + 78061 0.7 0.985051
Target:  5'- cCCUCGCggccacgacGGCGCAGGAGUccggGCGGcGGCc -3'
miRNA:   3'- -GGGGCGa--------CCGCGUUUUUA----UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 27364 0.7 0.985051
Target:  5'- gCCCCaGCUgcccccccGGCGCGc----GCGAUAGCg -3'
miRNA:   3'- -GGGG-CGA--------CCGCGUuuuuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 10938 0.7 0.985785
Target:  5'- gCCgGCUGGCGCGGcuggccuuugcgcauAuGUAC-GUGGCg -3'
miRNA:   3'- gGGgCGACCGCGUU---------------UuUAUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 55470 0.7 0.986318
Target:  5'- gCCCGUauucgaggagaucgUGGCGCGGcuccgGCAGUGGUu -3'
miRNA:   3'- gGGGCG--------------ACCGCGUUuuua-UGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 118748 0.7 0.986834
Target:  5'- gCCCCGCgcGGCugcgcgagcggGCGAAcAUGCAAgGGCc -3'
miRNA:   3'- -GGGGCGa-CCG-----------CGUUUuUAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 68460 0.7 0.986834
Target:  5'- gCCCGCugUGGagGCGAGGGUugAAgacgGGCa -3'
miRNA:   3'- gGGGCG--ACCg-CGUUUUUAugUUa---UCG- -5'
6487 3' -47.4 NC_001847.1 + 51147 0.7 0.986834
Target:  5'- cUCUCGCUGGCGCuGGAcccGUACucgacGGCc -3'
miRNA:   3'- -GGGGCGACCGCGuUUU---UAUGuua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 79699 0.7 0.986834
Target:  5'- gCCCCGCcGGCGCcAGGcgcUGCAGgaccGCg -3'
miRNA:   3'- -GGGGCGaCCGCGuUUUu--AUGUUau--CG- -5'
6487 3' -47.4 NC_001847.1 + 73835 0.7 0.986834
Target:  5'- gCCCCGCgcacccGCGCAAAAaacgccgccgcgGUGCGcggGGCg -3'
miRNA:   3'- -GGGGCGac----CGCGUUUU------------UAUGUua-UCG- -5'
6487 3' -47.4 NC_001847.1 + 61973 0.7 0.988449
Target:  5'- gCCCGCcGGCGCGGcgg-GCAuaaugGGCc -3'
miRNA:   3'- gGGGCGaCCGCGUUuuuaUGUua---UCG- -5'
6487 3' -47.4 NC_001847.1 + 70478 0.7 0.988449
Target:  5'- gUCCCGCaGGC-CAGAGGUGCGc--GCa -3'
miRNA:   3'- -GGGGCGaCCGcGUUUUUAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 52380 0.7 0.988449
Target:  5'- gCgCGCUGGCGCAGAcg-GCcGUcuacGGCg -3'
miRNA:   3'- gGgGCGACCGCGUUUuuaUGuUA----UCG- -5'
6487 3' -47.4 NC_001847.1 + 130900 0.7 0.988449
Target:  5'- -gCUGCUGGCGCAGcucGUGCc--GGCg -3'
miRNA:   3'- ggGGCGACCGCGUUuu-UAUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 54539 0.7 0.988449
Target:  5'- gUCCGggGGCGCAGAcg-GCGggGGCg -3'
miRNA:   3'- gGGGCgaCCGCGUUUuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 42792 0.7 0.988449
Target:  5'- gCCUCGC-GGCGCcgcccuGUGCcGUGGCc -3'
miRNA:   3'- -GGGGCGaCCGCGuuuu--UAUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 8863 0.7 0.988449
Target:  5'- -gCUGCUGGCGCAAuuggGCcccagAGCg -3'
miRNA:   3'- ggGGCGACCGCGUUuuuaUGuua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 2328 0.7 0.988449
Target:  5'- gCCCGCU-GCGCGGAAcccgccguuuUGCAcgGGCc -3'
miRNA:   3'- gGGGCGAcCGCGUUUUu---------AUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 30254 0.7 0.988903
Target:  5'- gCCCCGCggGGCGCucgccgccaccgcUGCGGcGGCg -3'
miRNA:   3'- -GGGGCGa-CCGCGuuuuu--------AUGUUaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.