miRNA display CGI


Results 121 - 140 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 30254 0.7 0.988903
Target:  5'- gCCCCGCggGGCGCucgccgccaccgcUGCGGcGGCg -3'
miRNA:   3'- -GGGGCGa-CCGCGuuuuu--------AUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 79011 0.7 0.989767
Target:  5'- aCCCCGgaGGCuGCGcggcGUGCAccgccaaAUGGCa -3'
miRNA:   3'- -GGGGCgaCCG-CGUuuu-UAUGU-------UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 76530 0.7 0.989906
Target:  5'- uCCCCGCgGGCGCGcug--GCc--AGCg -3'
miRNA:   3'- -GGGGCGaCCGCGUuuuuaUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 68090 0.7 0.989906
Target:  5'- aCgCCGC-GGCGCGA----GCGGUGGUg -3'
miRNA:   3'- -GgGGCGaCCGCGUUuuuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 94324 0.7 0.989906
Target:  5'- cCCCCgGgUGGUGCAGcucccccccGAAUACGAggaggacgcUGGCg -3'
miRNA:   3'- -GGGG-CgACCGCGUU---------UUUAUGUU---------AUCG- -5'
6487 3' -47.4 NC_001847.1 + 68476 0.7 0.989906
Target:  5'- gCCCCGCcgcgcgGGCGCAAGc--GCGccaGGCa -3'
miRNA:   3'- -GGGGCGa-----CCGCGUUUuuaUGUua-UCG- -5'
6487 3' -47.4 NC_001847.1 + 73886 0.7 0.990709
Target:  5'- uUCCGCcGGCGCcccgcgcaGCGAUGGCc -3'
miRNA:   3'- gGGGCGaCCGCGuuuuua--UGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 99244 0.7 0.991091
Target:  5'- -gCCGCUcguugucgcagccGGCGCGGGAGUAUAuuuGCg -3'
miRNA:   3'- ggGGCGA-------------CCGCGUUUUUAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 79628 0.7 0.991215
Target:  5'- gCCCCGCggcgGGCGCcgcca-GCAGcagGGCc -3'
miRNA:   3'- -GGGGCGa---CCGCGuuuuuaUGUUa--UCG- -5'
6487 3' -47.4 NC_001847.1 + 7300 0.7 0.991215
Target:  5'- -gCCGCUGGCGCGGc---GCcugAGCg -3'
miRNA:   3'- ggGGCGACCGCGUUuuuaUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 54810 0.7 0.991215
Target:  5'- gCCgCGCUGGCgaGCGcgGGcACGGUGGUg -3'
miRNA:   3'- -GGgGCGACCG--CGUuuUUaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 8 0.7 0.991215
Target:  5'- cCCCCGCgcggggGGCGCGGAGAa-------- -3'
miRNA:   3'- -GGGGCGa-----CCGCGUUUUUauguuaucg -5'
6487 3' -47.4 NC_001847.1 + 28765 0.69 0.992387
Target:  5'- aCCUgcaGCUGGCGCGccugcUGCAGcGGCg -3'
miRNA:   3'- -GGGg--CGACCGCGUuuuu-AUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 80457 0.69 0.992387
Target:  5'- cCCgCCGCUGGuCGCG--GAUGCAcc-GCc -3'
miRNA:   3'- -GG-GGCGACC-GCGUuuUUAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 96085 0.69 0.992387
Target:  5'- aCCCGCU-GCGCGAGccc-CAcgAGCg -3'
miRNA:   3'- gGGGCGAcCGCGUUUuuauGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 131578 0.69 0.992387
Target:  5'- aCCUgcaGCUGGCGCGccugcUGCAGcGGCg -3'
miRNA:   3'- -GGGg--CGACCGCGUuuuu-AUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 38530 0.69 0.992387
Target:  5'- cCCCCGCgcacGCGCAAGGAaaacccgcguUAC--UGGCa -3'
miRNA:   3'- -GGGGCGac--CGCGUUUUU----------AUGuuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 120063 0.69 0.992387
Target:  5'- gCCCCGCUGcCGCAG----GCGAUccccgGGCc -3'
miRNA:   3'- -GGGGCGACcGCGUUuuuaUGUUA-----UCG- -5'
6487 3' -47.4 NC_001847.1 + 125480 0.69 0.992387
Target:  5'- gCUCGCggcgGGCGCGAGGAcgcccggcUGCucgAGCg -3'
miRNA:   3'- gGGGCGa---CCGCGUUUUU--------AUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 109704 0.69 0.992387
Target:  5'- gCCUGCagucGGCGCuGAAGUACGAagagauguaccUGGCc -3'
miRNA:   3'- gGGGCGa---CCGCGuUUUUAUGUU-----------AUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.