Results 101 - 120 of 410 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6487 | 3' | -47.4 | NC_001847.1 | + | 78403 | 0.67 | 0.999063 |
Target: 5'- aCCCCGCcgcugcgGGCGCGc---UGC--UGGCg -3' miRNA: 3'- -GGGGCGa------CCGCGUuuuuAUGuuAUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 66875 | 0.67 | 0.999063 |
Target: 5'- gUCCCGCUcGCGCGcgGGUACucgucGGUc -3' miRNA: 3'- -GGGGCGAcCGCGUuuUUAUGuua--UCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 108255 | 0.67 | 0.999063 |
Target: 5'- cCCCUGCgUGuuGCccGAcgGCGGUGGCg -3' miRNA: 3'- -GGGGCG-ACcgCGuuUUuaUGUUAUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 95822 | 0.67 | 0.999063 |
Target: 5'- aCCCgGCUcGGCGgCAGGG--GCAAgccaGGCa -3' miRNA: 3'- -GGGgCGA-CCGC-GUUUUuaUGUUa---UCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 6374 | 0.67 | 0.999063 |
Target: 5'- -gCCGCUgcGGCaGCAGAAGgcgGCAAgcGCc -3' miRNA: 3'- ggGGCGA--CCG-CGUUUUUa--UGUUauCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 113326 | 0.67 | 0.999063 |
Target: 5'- -gCgGCUGGUGCAAGuc-GguGUGGCa -3' miRNA: 3'- ggGgCGACCGCGUUUuuaUguUAUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 5442 | 0.67 | 0.999063 |
Target: 5'- cCCCUGCgUGuuGCccGAcgGCGGUGGCg -3' miRNA: 3'- -GGGGCG-ACcgCGuuUUuaUGUUAUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 11472 | 0.67 | 0.999063 |
Target: 5'- gUCUCGCUGuCGCuuucgcUAUAAUAGCa -3' miRNA: 3'- -GGGGCGACcGCGuuuuu-AUGUUAUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 101761 | 0.67 | 0.999043 |
Target: 5'- aCCCCacggccgccaGgaGGCGCAgacugcugaggguGAGGUGCGAggGGCc -3' miRNA: 3'- -GGGG----------CgaCCGCGU-------------UUUUAUGUUa-UCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 91421 | 0.67 | 0.999003 |
Target: 5'- gCCCUGCUGGgaucucgcggacuuCGCAgacGAAGcGCGggAGCg -3' miRNA: 3'- -GGGGCGACC--------------GCGU---UUUUaUGUuaUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 15322 | 0.67 | 0.999003 |
Target: 5'- -gCCGCgGGCGUAGcgggggcgggcgggGGGUGCGugAUGGCu -3' miRNA: 3'- ggGGCGaCCGCGUU--------------UUUAUGU--UAUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 73215 | 0.67 | 0.99885 |
Target: 5'- gCCgCCGCUGaCGCGGAGGagggggGCGGcGGCg -3' miRNA: 3'- -GG-GGCGACcGCGUUUUUa-----UGUUaUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 55364 | 0.67 | 0.99885 |
Target: 5'- gCgCCGCgGGCGCcGGAG-ACGGUcGGCg -3' miRNA: 3'- -GgGGCGaCCGCGuUUUUaUGUUA-UCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 24082 | 0.67 | 0.99885 |
Target: 5'- gCCCGC-GGCaGCGAGAGgaccACGcccucGUAGCc -3' miRNA: 3'- gGGGCGaCCG-CGUUUUUa---UGU-----UAUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 119024 | 0.67 | 0.99885 |
Target: 5'- aCCCGCagguggGGCGCAcgcuguGGGAaGCGGUAcGCc -3' miRNA: 3'- gGGGCGa-----CCGCGU------UUUUaUGUUAU-CG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 93821 | 0.67 | 0.99885 |
Target: 5'- uCCCCGCUGGacuuuGCGcc---GCGcgAGCu -3' miRNA: 3'- -GGGGCGACCg----CGUuuuuaUGUuaUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 8641 | 0.67 | 0.99885 |
Target: 5'- gCCgCUGCggacucgGGCGCccag--ACGAUGGCg -3' miRNA: 3'- -GG-GGCGa------CCGCGuuuuuaUGUUAUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 49697 | 0.67 | 0.99885 |
Target: 5'- uUCCUGCacuacgggGGCGCGGcgcccGUGCAAgugGGCg -3' miRNA: 3'- -GGGGCGa-------CCGCGUUuu---UAUGUUa--UCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 49304 | 0.67 | 0.99885 |
Target: 5'- uCgCUGCUGGCGguGcugccccuGGUGCGcgGGCu -3' miRNA: 3'- -GgGGCGACCGCguUu-------UUAUGUuaUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 106815 | 0.67 | 0.99885 |
Target: 5'- gCCCCGCggGGCGCcgg---GCcc-GGCg -3' miRNA: 3'- -GGGGCGa-CCGCGuuuuuaUGuuaUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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