miRNA display CGI


Results 81 - 100 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 27865 0.67 0.9983
Target:  5'- gCCCUGUgGGcCGCGcucGAGcgGUugGAUGGCg -3'
miRNA:   3'- -GGGGCGaCC-GCGU---UUU--UAugUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 28056 0.71 0.982883
Target:  5'- gCgCUGCUGGCGgAAAAccugcccggucugGUGCuGUGGCg -3'
miRNA:   3'- -GgGGCGACCGCgUUUU-------------UAUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 28398 0.69 0.99343
Target:  5'- cCCCCGCcgcGGCGCca----GCGcgGGCg -3'
miRNA:   3'- -GGGGCGa--CCGCGuuuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 28765 0.69 0.992387
Target:  5'- aCCUgcaGCUGGCGCGccugcUGCAGcGGCg -3'
miRNA:   3'- -GGGg--CGACCGCGUuuuu-AUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 28878 0.67 0.999241
Target:  5'- --gCGCUGGgGCGAGu-UGCAG-AGCa -3'
miRNA:   3'- gggGCGACCgCGUUUuuAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 29009 0.68 0.997541
Target:  5'- gCCgUGCUGGCGCAGcuAUcGCGcccagAGCc -3'
miRNA:   3'- -GGgGCGACCGCGUUuuUA-UGUua---UCG- -5'
6487 3' -47.4 NC_001847.1 + 29252 0.71 0.976036
Target:  5'- gCCCCGCggccGCGCAcgGAcUAC-GUGGCg -3'
miRNA:   3'- -GGGGCGac--CGCGUuuUU-AUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 29432 0.68 0.99652
Target:  5'- gCCCCGCUcGCGCGGuacucgACGcgcGGCg -3'
miRNA:   3'- -GGGGCGAcCGCGUUuuua--UGUua-UCG- -5'
6487 3' -47.4 NC_001847.1 + 29508 0.66 0.999694
Target:  5'- gCCCGCcGGCG--GAGGUGCc--GGCg -3'
miRNA:   3'- gGGGCGaCCGCguUUUUAUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 29721 0.71 0.980939
Target:  5'- -aCUGC-GGCGCGGGA--GCGGUGGCc -3'
miRNA:   3'- ggGGCGaCCGCGUUUUuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 30254 0.7 0.988903
Target:  5'- gCCCCGCggGGCGCucgccgccaccgcUGCGGcGGCg -3'
miRNA:   3'- -GGGGCGa-CCGCGuuuuu--------AUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 30272 0.69 0.994356
Target:  5'- gCgCCGC-GGCGCAGAcg-ACAcaAGCg -3'
miRNA:   3'- -GgGGCGaCCGCGUUUuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 30382 0.66 0.999389
Target:  5'- --gCGCUGGUGCGggcgcAGAcgGCGcUGGCg -3'
miRNA:   3'- gggGCGACCGCGU-----UUUuaUGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 30426 0.66 0.999612
Target:  5'- gCUCGUggcgGGCGCGGAGGcGCcggGGCu -3'
miRNA:   3'- gGGGCGa---CCGCGUUUUUaUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 30577 0.67 0.998598
Target:  5'- uUCCGC-GGCGCGguGGAGUACcucuGCg -3'
miRNA:   3'- gGGGCGaCCGCGU--UUUUAUGuuauCG- -5'
6487 3' -47.4 NC_001847.1 + 30758 0.68 0.99795
Target:  5'- gCgCGCUGGCGCGcgccGUGC--UGGCc -3'
miRNA:   3'- gGgGCGACCGCGUuuu-UAUGuuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 31208 0.74 0.908109
Target:  5'- gCCgCCGCUGGUGCuGGAGgccGCGGcGGCg -3'
miRNA:   3'- -GG-GGCGACCGCGuUUUUa--UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 31365 0.66 0.99963
Target:  5'- gCCCCGCcggcccgggugccGGCGCAGucguccccggGCGcgGGCu -3'
miRNA:   3'- -GGGGCGa------------CCGCGUUuuua------UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 31441 0.66 0.999389
Target:  5'- aCgUCGCUGGCGCu--GGUGaucgugGGCg -3'
miRNA:   3'- -GgGGCGACCGCGuuuUUAUguua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 31699 0.66 0.999389
Target:  5'- gCCUCGggGGCGgGGGGAgGCGcgGGCc -3'
miRNA:   3'- -GGGGCgaCCGCgUUUUUaUGUuaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.