miRNA display CGI


Results 101 - 120 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 31981 0.71 0.978591
Target:  5'- gCCCCGg-GGCGCGAAgcccggGAgggACGcgGGCg -3'
miRNA:   3'- -GGGGCgaCCGCGUUU------UUa--UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 32046 0.78 0.752603
Target:  5'- cCCCCGCgaaagguccggGGCGCGGAGAcgGCGggGGCc -3'
miRNA:   3'- -GGGGCGa----------CCGCGUUUUUa-UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 32253 0.67 0.9983
Target:  5'- -gCCGCUGaCGCAGAcgcGUGC-GUGGCu -3'
miRNA:   3'- ggGGCGACcGCGUUUu--UAUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 32326 0.66 0.999389
Target:  5'- aCCCGCUGGaacaCGCGAu----CGcgGGCc -3'
miRNA:   3'- gGGGCGACC----GCGUUuuuauGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 32361 0.69 0.995173
Target:  5'- cCCCCGCgcgggggGGCGCcGGcGU-CGcgGGCg -3'
miRNA:   3'- -GGGGCGa------CCGCGuUUuUAuGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 32712 0.69 0.994356
Target:  5'- gCCCGCU-GUGCAAGGcgcccGUGCAGUcucucauccacAGCg -3'
miRNA:   3'- gGGGCGAcCGCGUUUU-----UAUGUUA-----------UCG- -5'
6487 3' -47.4 NC_001847.1 + 32786 0.68 0.99795
Target:  5'- -gCCGCUGGaCGCGcGAGUcCGAgcGCu -3'
miRNA:   3'- ggGGCGACC-GCGUuUUUAuGUUauCG- -5'
6487 3' -47.4 NC_001847.1 + 33524 0.66 0.999612
Target:  5'- gCCgCCGCggaGGCGCcgg---GCGcgGGCg -3'
miRNA:   3'- -GG-GGCGa--CCGCGuuuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 33779 0.74 0.92063
Target:  5'- cCCCCGC-GGCGCAAGcgcgcgcAUGCAGccccgAGCc -3'
miRNA:   3'- -GGGGCGaCCGCGUUUu------UAUGUUa----UCG- -5'
6487 3' -47.4 NC_001847.1 + 33892 0.68 0.99795
Target:  5'- gCCgCGCgUGGcCGCGGGcGUGCAggaccgccuGUGGCa -3'
miRNA:   3'- -GGgGCG-ACC-GCGUUUuUAUGU---------UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 33962 0.66 0.999612
Target:  5'- aCCCgagcgCGCUGGCGCcgggc-GCGcUGGCc -3'
miRNA:   3'- -GGG-----GCGACCGCGuuuuuaUGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 34049 0.71 0.980939
Target:  5'- gCCCCGC-GGCGCGcgcguuuuucGAGggGCAcgcggagcgcGUGGCg -3'
miRNA:   3'- -GGGGCGaCCGCGU----------UUUuaUGU----------UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 34122 0.68 0.99795
Target:  5'- gCCUGC-GGCGCcugcc-GCGGUGGCc -3'
miRNA:   3'- gGGGCGaCCGCGuuuuuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 34411 0.68 0.99795
Target:  5'- gCCCCgagaGCUcGGCGCAGAAGagGCGGc-GCa -3'
miRNA:   3'- -GGGG----CGA-CCGCGUUUUUa-UGUUauCG- -5'
6487 3' -47.4 NC_001847.1 + 34468 0.72 0.970267
Target:  5'- -gCCGCcGGCgGCGAGGAUGCGGacGGCg -3'
miRNA:   3'- ggGGCGaCCG-CGUUUUUAUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 34542 0.67 0.9983
Target:  5'- gCCCGCcgGGCGCuuGGGgcCAcaGGCc -3'
miRNA:   3'- gGGGCGa-CCGCGuuUUUauGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 34695 0.69 0.992387
Target:  5'- --gCGCUGGCGCGAGGAcuUGCGcgccGCg -3'
miRNA:   3'- gggGCGACCGCGUUUUU--AUGUuau-CG- -5'
6487 3' -47.4 NC_001847.1 + 34812 0.72 0.959848
Target:  5'- -gCCGCUGGCGCGGcAGgcCGAccgGGCg -3'
miRNA:   3'- ggGGCGACCGCGUUuUUauGUUa--UCG- -5'
6487 3' -47.4 NC_001847.1 + 34931 0.76 0.838944
Target:  5'- gCCgCCGCUGGCGCAGcugcgcgGCAucgcGUGGUg -3'
miRNA:   3'- -GG-GGCGACCGCGUUuuua---UGU----UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 35302 0.66 0.999511
Target:  5'- gCCCCGCcgagcGGCGCGcgcuGGAaGCG--GGCg -3'
miRNA:   3'- -GGGGCGa----CCGCGUu---UUUaUGUuaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.