miRNA display CGI


Results 121 - 140 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 35371 0.68 0.99795
Target:  5'- gCgCGCUGGCGCA-----GCuggAGCg -3'
miRNA:   3'- gGgGCGACCGCGUuuuuaUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 35463 0.69 0.99418
Target:  5'- -gCCGC-GGCGCGAGAGgcgcuagaggcgGCAAaGGCg -3'
miRNA:   3'- ggGGCGaCCGCGUUUUUa-----------UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 35589 0.66 0.999612
Target:  5'- --gCGCcGGCGCAAGGcUGCGGUAcaucGCa -3'
miRNA:   3'- gggGCGaCCGCGUUUUuAUGUUAU----CG- -5'
6487 3' -47.4 NC_001847.1 + 35710 0.77 0.811747
Target:  5'- uCCCaCGCUGGCGCAGcguAUGC---GGCu -3'
miRNA:   3'- -GGG-GCGACCGCGUUuu-UAUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 35782 0.68 0.995892
Target:  5'- aCCCGCUaacGGCGCGcaucgACGAccGCg -3'
miRNA:   3'- gGGGCGA---CCGCGUuuuuaUGUUauCG- -5'
6487 3' -47.4 NC_001847.1 + 35986 0.72 0.970267
Target:  5'- gCCgGCUGGCGCcacAAGGcGCGcggAUAGCg -3'
miRNA:   3'- gGGgCGACCGCGu--UUUUaUGU---UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 36183 0.66 0.99976
Target:  5'- aCCCCuacGCcgUGGCGCGugggcucgcugAAGAUAUAA-GGCg -3'
miRNA:   3'- -GGGG---CG--ACCGCGU-----------UUUUAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 36624 0.66 0.999612
Target:  5'- aCCgCGCggugGGCGaCAAGcugGCuGUGGCg -3'
miRNA:   3'- -GGgGCGa---CCGC-GUUUuuaUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 36686 0.72 0.967037
Target:  5'- cCCCCGCUGGaCG-AGAGcgGC-GUGGUg -3'
miRNA:   3'- -GGGGCGACC-GCgUUUUuaUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 36943 0.68 0.99652
Target:  5'- uUCUCGCUGGCcgaGCGGGGGcUGCGGccAGCg -3'
miRNA:   3'- -GGGGCGACCG---CGUUUUU-AUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 37111 0.72 0.959848
Target:  5'- gCCCGCUGGUGUuc--AUGCucuggGGCg -3'
miRNA:   3'- gGGGCGACCGCGuuuuUAUGuua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 37409 0.72 0.970267
Target:  5'- gCgUGCUGGCGCGcauGUGCAuuccgGGCg -3'
miRNA:   3'- gGgGCGACCGCGUuuuUAUGUua---UCG- -5'
6487 3' -47.4 NC_001847.1 + 37475 0.66 0.999687
Target:  5'- aCUCGCUgGGCGCAcagacccAGAGcUACGAcgccuuuuUGGCg -3'
miRNA:   3'- gGGGCGA-CCGCGU-------UUUU-AUGUU--------AUCG- -5'
6487 3' -47.4 NC_001847.1 + 37615 0.67 0.99885
Target:  5'- --aCGCUGGC-CAA--GUACAccAUAGCg -3'
miRNA:   3'- gggGCGACCGcGUUuuUAUGU--UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 38530 0.69 0.992387
Target:  5'- cCCCCGCgcacGCGCAAGGAaaacccgcguUAC--UGGCa -3'
miRNA:   3'- -GGGGCGac--CGCGUUUUU----------AUGuuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 38698 0.68 0.99795
Target:  5'- aCgCGCUGGCGUgcguGAAGGcAUAcgAGCa -3'
miRNA:   3'- gGgGCGACCGCG----UUUUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 39327 0.69 0.994356
Target:  5'- gCCgCGCUGGuCGCGGAcc-ACGAUguugGGCa -3'
miRNA:   3'- -GGgGCGACC-GCGUUUuuaUGUUA----UCG- -5'
6487 3' -47.4 NC_001847.1 + 40246 0.76 0.864206
Target:  5'- gCCCCgGCUGGCccGUGGcgGUGCGGUAGUc -3'
miRNA:   3'- -GGGG-CGACCG--CGUUuuUAUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 40275 0.66 0.999574
Target:  5'- uCCUCGaaGGUGCGGAuguugacaaagguGUACAcggGUAGCg -3'
miRNA:   3'- -GGGGCgaCCGCGUUUu------------UAUGU---UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 40301 0.67 0.998625
Target:  5'- uCCCC-CUcGGCGCAGAcuccgacgccacCGAUAGCu -3'
miRNA:   3'- -GGGGcGA-CCGCGUUUuuau--------GUUAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.