miRNA display CGI


Results 61 - 80 of 410 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 115089 0.67 0.999241
Target:  5'- aCgCCGCUccCGCAAAcGUACAGUccAGCu -3'
miRNA:   3'- -GgGGCGAccGCGUUUuUAUGUUA--UCG- -5'
6487 3' -47.4 NC_001847.1 + 115059 0.66 0.999511
Target:  5'- gCUCCaGCUGGCGCucgccccGAGcGCAGgcagcgAGCg -3'
miRNA:   3'- -GGGG-CGACCGCGuu-----UUUaUGUUa-----UCG- -5'
6487 3' -47.4 NC_001847.1 + 114859 0.66 0.999511
Target:  5'- aCCaaaCGCcGGCGCu-GGGUGCGgccuuuaaaggAUAGCa -3'
miRNA:   3'- -GGg--GCGaCCGCGuuUUUAUGU-----------UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 113960 0.67 0.999241
Target:  5'- aCgCCGCcgGGCGCGucgccGCAGaAGCg -3'
miRNA:   3'- -GgGGCGa-CCGCGUuuuuaUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 113836 0.69 0.994356
Target:  5'- aCCCCGCgUGGCGCGccgguccccguGGAUGCc---GCg -3'
miRNA:   3'- -GGGGCG-ACCGCGUu----------UUUAUGuuauCG- -5'
6487 3' -47.4 NC_001847.1 + 113434 0.72 0.967037
Target:  5'- gCCCUGCUGGCGCu--GGUcCuccGGCu -3'
miRNA:   3'- -GGGGCGACCGCGuuuUUAuGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 113326 0.67 0.999063
Target:  5'- -gCgGCUGGUGCAAGuc-GguGUGGCa -3'
miRNA:   3'- ggGgCGACCGCGUUUuuaUguUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 112086 0.67 0.998598
Target:  5'- aCCCgGCgguccGGCGCAAGGuggAC--UGGCu -3'
miRNA:   3'- -GGGgCGa----CCGCGUUUUua-UGuuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 111090 0.71 0.973264
Target:  5'- gCCCgGCU-GCGCGAGAAggucgcgcgGCAcgGGCu -3'
miRNA:   3'- -GGGgCGAcCGCGUUUUUa--------UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 110828 0.76 0.864206
Target:  5'- cCCCCGCgcgGGCa-AAAAAUcCAAUGGCg -3'
miRNA:   3'- -GGGGCGa--CCGcgUUUUUAuGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 110682 0.69 0.99343
Target:  5'- gCCgCGCUGcguGCGCGAGGGUGag--GGCg -3'
miRNA:   3'- -GGgGCGAC---CGCGUUUUUAUguuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 109704 0.69 0.992387
Target:  5'- gCCUGCagucGGCGCuGAAGUACGAagagauguaccUGGCc -3'
miRNA:   3'- gGGGCGa---CCGCGuUUUUAUGUU-----------AUCG- -5'
6487 3' -47.4 NC_001847.1 + 108476 0.75 0.894512
Target:  5'- gCCCGCccaGGCGCGAAGGUGgGccGGCc -3'
miRNA:   3'- gGGGCGa--CCGCGUUUUUAUgUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 108255 0.67 0.999063
Target:  5'- cCCCUGCgUGuuGCccGAcgGCGGUGGCg -3'
miRNA:   3'- -GGGGCG-ACcgCGuuUUuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 106815 0.67 0.99885
Target:  5'- gCCCCGCggGGCGCcgg---GCcc-GGCg -3'
miRNA:   3'- -GGGGCGa-CCGCGuuuuuaUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 106746 0.75 0.887317
Target:  5'- gCCCgCGCUGGCGCcgcg--GCGGggggGGCg -3'
miRNA:   3'- -GGG-GCGACCGCGuuuuuaUGUUa---UCG- -5'
6487 3' -47.4 NC_001847.1 + 105976 0.76 0.856015
Target:  5'- gUCCGCguaguacgGGUGCAGGuuUGCGAUAGUg -3'
miRNA:   3'- gGGGCGa-------CCGCGUUUuuAUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 105895 0.71 0.973264
Target:  5'- gUCCGUgcgcGGcCGCGGGGccAUGCAGUGGCg -3'
miRNA:   3'- gGGGCGa---CC-GCGUUUU--UAUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 105727 0.68 0.997068
Target:  5'- gCUCGCUGGCGCGcAGGU-CAAa--- -3'
miRNA:   3'- gGGGCGACCGCGUuUUUAuGUUaucg -5'
6487 3' -47.4 NC_001847.1 + 105594 0.67 0.9983
Target:  5'- cCCCCGCcGGCGgccucCAGGGccGCGAgcGCg -3'
miRNA:   3'- -GGGGCGaCCGC-----GUUUUuaUGUUauCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.