miRNA display CGI


Results 81 - 100 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 105225 0.77 0.821012
Target:  5'- aCCCGCgGGCGCGcgGGcACAGgcgGGCg -3'
miRNA:   3'- gGGGCGaCCGCGUuuUUaUGUUa--UCG- -5'
6487 3' -47.4 NC_001847.1 + 104449 0.69 0.994356
Target:  5'- -aCCGC-GGCGCGcAGGUACAcguGCg -3'
miRNA:   3'- ggGGCGaCCGCGUuUUUAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 104000 0.66 0.99976
Target:  5'- gCCCGCgaaGGCcagccGCAGAA--ACGAcAGCg -3'
miRNA:   3'- gGGGCGa--CCG-----CGUUUUuaUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 103862 0.66 0.999511
Target:  5'- gCCCGcCUGGU-CGGuGAUGCGGUuuGGCa -3'
miRNA:   3'- gGGGC-GACCGcGUUuUUAUGUUA--UCG- -5'
6487 3' -47.4 NC_001847.1 + 103842 0.69 0.993231
Target:  5'- gCCCGC-GGCGCGccgcagcaGCAcgAGCg -3'
miRNA:   3'- gGGGCGaCCGCGUuuuua---UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 103735 0.69 0.995173
Target:  5'- gCCCGCcGGCGCcGGGAaGCccgAGCc -3'
miRNA:   3'- gGGGCGaCCGCGuUUUUaUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 103663 0.67 0.9983
Target:  5'- -aCCGCgucgccGGCGCGAAAG-ACAccgacgcccAUGGCg -3'
miRNA:   3'- ggGGCGa-----CCGCGUUUUUaUGU---------UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 103277 0.66 0.99976
Target:  5'- gCUCCGCcGGCaGCAAcgccgGCGAgcccgGGCg -3'
miRNA:   3'- -GGGGCGaCCG-CGUUuuua-UGUUa----UCG- -5'
6487 3' -47.4 NC_001847.1 + 101948 0.67 0.998166
Target:  5'- aCCCGCgccgccaagucgGGCGCAGAGccggccagccgcUGCAGcGGCg -3'
miRNA:   3'- gGGGCGa-----------CCGCGUUUUu-----------AUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 101761 0.67 0.999043
Target:  5'- aCCCCacggccgccaGgaGGCGCAgacugcugaggguGAGGUGCGAggGGCc -3'
miRNA:   3'- -GGGG----------CgaCCGCGU-------------UUUUAUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 101549 0.71 0.980939
Target:  5'- gUCCaGCUGGCGCAGGAcguCGucGGCa -3'
miRNA:   3'- -GGGgCGACCGCGUUUUuauGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 99597 0.72 0.955877
Target:  5'- gCCaaGCuUGGCGCGGGGcUGCAGUccGGCg -3'
miRNA:   3'- -GGggCG-ACCGCGUUUUuAUGUUA--UCG- -5'
6487 3' -47.4 NC_001847.1 + 99244 0.7 0.991091
Target:  5'- -gCCGCUcguugucgcagccGGCGCGGGAGUAUAuuuGCg -3'
miRNA:   3'- ggGGCGA-------------CCGCGUUUUUAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 98204 0.71 0.980939
Target:  5'- cCCCCGCUcGGCcaGCGAGAA-GCAc-AGCg -3'
miRNA:   3'- -GGGGCGA-CCG--CGUUUUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 97874 0.67 0.998803
Target:  5'- gCCCGCgucccagucggcGGCGCGGAug-GCGAacAGCg -3'
miRNA:   3'- gGGGCGa-----------CCGCGUUUuuaUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 97529 0.71 0.980939
Target:  5'- uCCCCGUcGG-GCAAAAGaGCGcgGGCc -3'
miRNA:   3'- -GGGGCGaCCgCGUUUUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 97486 0.69 0.992387
Target:  5'- aCCUCGCUGG-GCGGcugccGCAcgAGCg -3'
miRNA:   3'- -GGGGCGACCgCGUUuuua-UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 96880 0.71 0.980939
Target:  5'- gCCCGC-GcGUGCGGAAAUAaauuguCGGUGGCg -3'
miRNA:   3'- gGGGCGaC-CGCGUUUUUAU------GUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 96085 0.69 0.992387
Target:  5'- aCCCGCU-GCGCGAGccc-CAcgAGCg -3'
miRNA:   3'- gGGGCGAcCGCGUUUuuauGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 95822 0.67 0.999063
Target:  5'- aCCCgGCUcGGCGgCAGGG--GCAAgccaGGCa -3'
miRNA:   3'- -GGGgCGA-CCGC-GUUUUuaUGUUa---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.