miRNA display CGI


Results 101 - 120 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 95776 0.74 0.92063
Target:  5'- -gCCGCucUGGCGCGGGGGgcgGCGcgGGCg -3'
miRNA:   3'- ggGGCG--ACCGCGUUUUUa--UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 95722 0.72 0.970267
Target:  5'- -nCCGCucUGGCGCGGGGGgcgGCGcgGGCc -3'
miRNA:   3'- ggGGCG--ACCGCGUUUUUa--UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 95695 0.72 0.963566
Target:  5'- -gCCGCucUGGCGCGGGGGgcgGCGcgGGCc -3'
miRNA:   3'- ggGGCG--ACCGCGUUUUUa--UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 95641 0.72 0.963566
Target:  5'- -gCCGCucUGGCGCGGGGGgcgGCGcgGGCc -3'
miRNA:   3'- ggGGCG--ACCGCGUUUUUa--UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 95301 0.67 0.998598
Target:  5'- -gCCGCUGGCGCcuccagGCGc-GGCg -3'
miRNA:   3'- ggGGCGACCGCGuuuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 94985 0.68 0.99652
Target:  5'- cCCCCGCggcuuUGGCGCAGc--UGCGc--GCa -3'
miRNA:   3'- -GGGGCG-----ACCGCGUUuuuAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 94396 0.68 0.99795
Target:  5'- --aCGCUuuuuucggaucGGCGCAAuuGUGCGAUcGCa -3'
miRNA:   3'- gggGCGA-----------CCGCGUUuuUAUGUUAuCG- -5'
6487 3' -47.4 NC_001847.1 + 94324 0.7 0.989906
Target:  5'- cCCCCgGgUGGUGCAGcucccccccGAAUACGAggaggacgcUGGCg -3'
miRNA:   3'- -GGGG-CgACCGCGUU---------UUUAUGUU---------AUCG- -5'
6487 3' -47.4 NC_001847.1 + 93821 0.67 0.99885
Target:  5'- uCCCCGCUGGacuuuGCGcc---GCGcgAGCu -3'
miRNA:   3'- -GGGGCGACCg----CGUuuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 93556 0.66 0.999612
Target:  5'- gCCaCGCUGGCcucgacGCAAA---GCAcgGGCc -3'
miRNA:   3'- gGG-GCGACCG------CGUUUuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 93272 0.69 0.99343
Target:  5'- gCCUGCUGGUcgccgGCAAcc-UGCAauGUGGCg -3'
miRNA:   3'- gGGGCGACCG-----CGUUuuuAUGU--UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 91421 0.67 0.999003
Target:  5'- gCCCUGCUGGgaucucgcggacuuCGCAgacGAAGcGCGggAGCg -3'
miRNA:   3'- -GGGGCGACC--------------GCGU---UUUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 90556 0.68 0.995892
Target:  5'- cCCUCGCcGcGCGCGAGGGcgACGAcgAGCc -3'
miRNA:   3'- -GGGGCGaC-CGCGUUUUUa-UGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 90373 0.68 0.996579
Target:  5'- aCCUGCUGGaCGCGGAccacggcccccggccGUACGugcuuGUGGCg -3'
miRNA:   3'- gGGGCGACC-GCGUUUu--------------UAUGU-----UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 90055 0.66 0.999612
Target:  5'- cCCCCGUcccGGCGCAc-----CAcgAGCa -3'
miRNA:   3'- -GGGGCGa--CCGCGUuuuuauGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 90010 0.71 0.980939
Target:  5'- aCCCCGCagaaGGCGCcGAGcUGCAccuGCg -3'
miRNA:   3'- -GGGGCGa---CCGCGuUUUuAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 88389 0.67 0.999241
Target:  5'- gCCCCGCgcggcgggcgGGCGCGccgucGGGUACcagggGGCc -3'
miRNA:   3'- -GGGGCGa---------CCGCGUu----UUUAUGuua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 86344 0.67 0.99885
Target:  5'- uCCCCGaUGGCGCcg----GCGA-GGCg -3'
miRNA:   3'- -GGGGCgACCGCGuuuuuaUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 85963 0.67 0.998779
Target:  5'- uCCCCGCUugcagcggacgcccGGCGCGug---ACcGUGGUc -3'
miRNA:   3'- -GGGGCGA--------------CCGCGUuuuuaUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 85936 0.69 0.99343
Target:  5'- gCCCGCgggccccGGCGCGAGGGcUACcgucuUGGCc -3'
miRNA:   3'- gGGGCGa------CCGCGUUUUU-AUGuu---AUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.