miRNA display CGI


Results 81 - 100 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 29721 0.71 0.980939
Target:  5'- -aCUGC-GGCGCGGGA--GCGGUGGCc -3'
miRNA:   3'- ggGGCGaCCGCGUUUUuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 34049 0.71 0.980939
Target:  5'- gCCCCGC-GGCGCGcgcguuuuucGAGggGCAcgcggagcgcGUGGCg -3'
miRNA:   3'- -GGGGCGaCCGCGU----------UUUuaUGU----------UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 90010 0.71 0.980939
Target:  5'- aCCCCGCagaaGGCGCcGAGcUGCAccuGCg -3'
miRNA:   3'- -GGGGCGa---CCGCGuUUUuAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 28056 0.71 0.982883
Target:  5'- gCgCUGCUGGCGgAAAAccugcccggucugGUGCuGUGGCg -3'
miRNA:   3'- -GgGGCGACCGCgUUUU-------------UAUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 6110 0.71 0.983089
Target:  5'- gCCCGCgaGGCGCG-----GCGcgAGCg -3'
miRNA:   3'- gGGGCGa-CCGCGUuuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 50040 0.71 0.983089
Target:  5'- gCCCGCggGGCGCGGug--GCGGccGCg -3'
miRNA:   3'- gGGGCGa-CCGCGUUuuuaUGUUauCG- -5'
6487 3' -47.4 NC_001847.1 + 81328 0.7 0.984482
Target:  5'- cCCCCGCUccggcgcgccagggGGCGCAGAccuccucGCGGcGGCu -3'
miRNA:   3'- -GGGGCGA--------------CCGCGUUUuua----UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 76595 0.71 0.973264
Target:  5'- gCCgCCGCUGGCggcgGCGAAGAccGCGGcGGCc -3'
miRNA:   3'- -GG-GGCGACCG----CGUUUUUa-UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 66544 0.71 0.972683
Target:  5'- gCCCGCUGGaCGCGugcgccuacUGCGGcAGCg -3'
miRNA:   3'- gGGGCGACC-GCGUuuuu-----AUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 34468 0.72 0.970267
Target:  5'- -gCCGCcGGCgGCGAGGAUGCGGacGGCg -3'
miRNA:   3'- ggGGCGaCCG-CGUUUUUAUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 99597 0.72 0.955877
Target:  5'- gCCaaGCuUGGCGCGGGGcUGCAGUccGGCg -3'
miRNA:   3'- -GGggCG-ACCGCGUUUUuAUGUUA--UCG- -5'
6487 3' -47.4 NC_001847.1 + 34812 0.72 0.959848
Target:  5'- -gCCGCUGGCGCGGcAGgcCGAccgGGCg -3'
miRNA:   3'- ggGGCGACCGCGUUuUUauGUUa--UCG- -5'
6487 3' -47.4 NC_001847.1 + 45641 0.72 0.963566
Target:  5'- gCCUCGCUGcGCaGCAGGAGUuu-GUAGUa -3'
miRNA:   3'- -GGGGCGAC-CG-CGUUUUUAuguUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 36686 0.72 0.967037
Target:  5'- cCCCCGCUGGaCG-AGAGcgGC-GUGGUg -3'
miRNA:   3'- -GGGGCGACC-GCgUUUUuaUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 85855 0.72 0.967037
Target:  5'- gCgUCGCUGGCGCGGAuguuAUACGGc-GCg -3'
miRNA:   3'- -GgGGCGACCGCGUUUu---UAUGUUauCG- -5'
6487 3' -47.4 NC_001847.1 + 113434 0.72 0.967037
Target:  5'- gCCCUGCUGGCGCu--GGUcCuccGGCu -3'
miRNA:   3'- -GGGGCGACCGCGuuuUUAuGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 45587 0.72 0.967037
Target:  5'- cCCUCGCcgGGCGCGAcgaucacguaggGGAUGCGGUccuugacguuggGGCg -3'
miRNA:   3'- -GGGGCGa-CCGCGUU------------UUUAUGUUA------------UCG- -5'
6487 3' -47.4 NC_001847.1 + 37409 0.72 0.970267
Target:  5'- gCgUGCUGGCGCGcauGUGCAuuccgGGCg -3'
miRNA:   3'- gGgGCGACCGCGUuuuUAUGUua---UCG- -5'
6487 3' -47.4 NC_001847.1 + 43230 0.72 0.970267
Target:  5'- gCCCGgUGGCGguGGGGgcGCGcgGGCg -3'
miRNA:   3'- gGGGCgACCGCguUUUUa-UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 43142 0.7 0.984673
Target:  5'- gCCCGCgGGCGCugcgcccGCAGUcgcuGGCg -3'
miRNA:   3'- gGGGCGaCCGCGuuuuua-UGUUA----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.