Results 101 - 120 of 410 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6487 | 3' | -47.4 | NC_001847.1 | + | 51147 | 0.7 | 0.986834 |
Target: 5'- cUCUCGCUGGCGCuGGAcccGUACucgacGGCc -3' miRNA: 3'- -GGGGCGACCGCGuUUU---UAUGuua--UCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 73835 | 0.7 | 0.986834 |
Target: 5'- gCCCCGCgcacccGCGCAAAAaacgccgccgcgGUGCGcggGGCg -3' miRNA: 3'- -GGGGCGac----CGCGUUUU------------UAUGUua-UCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 118748 | 0.7 | 0.986834 |
Target: 5'- gCCCCGCgcGGCugcgcgagcggGCGAAcAUGCAAgGGCc -3' miRNA: 3'- -GGGGCGa-CCG-----------CGUUUuUAUGUUaUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 2328 | 0.7 | 0.988449 |
Target: 5'- gCCCGCU-GCGCGGAAcccgccguuuUGCAcgGGCc -3' miRNA: 3'- gGGGCGAcCGCGUUUUu---------AUGUuaUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 8863 | 0.7 | 0.988449 |
Target: 5'- -gCUGCUGGCGCAAuuggGCcccagAGCg -3' miRNA: 3'- ggGGCGACCGCGUUuuuaUGuua--UCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 28056 | 0.71 | 0.982883 |
Target: 5'- gCgCUGCUGGCGgAAAAccugcccggucugGUGCuGUGGCg -3' miRNA: 3'- -GgGGCGACCGCgUUUU-------------UAUGuUAUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 90010 | 0.71 | 0.980939 |
Target: 5'- aCCCCGCagaaGGCGCcGAGcUGCAccuGCg -3' miRNA: 3'- -GGGGCGa---CCGCGuUUUuAUGUuauCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 85855 | 0.72 | 0.967037 |
Target: 5'- gCgUCGCUGGCGCGGAuguuAUACGGc-GCg -3' miRNA: 3'- -GgGGCGACCGCGUUUu---UAUGUUauCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 113434 | 0.72 | 0.967037 |
Target: 5'- gCCCUGCUGGCGCu--GGUcCuccGGCu -3' miRNA: 3'- -GGGGCGACCGCGuuuUUAuGuuaUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 45587 | 0.72 | 0.967037 |
Target: 5'- cCCUCGCcgGGCGCGAcgaucacguaggGGAUGCGGUccuugacguuggGGCg -3' miRNA: 3'- -GGGGCGa-CCGCGUU------------UUUAUGUUA------------UCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 37409 | 0.72 | 0.970267 |
Target: 5'- gCgUGCUGGCGCGcauGUGCAuuccgGGCg -3' miRNA: 3'- gGgGCGACCGCGUuuuUAUGUua---UCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 43230 | 0.72 | 0.970267 |
Target: 5'- gCCCGgUGGCGguGGGGgcGCGcgGGCg -3' miRNA: 3'- gGGGCgACCGCguUUUUa-UGUuaUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 34468 | 0.72 | 0.970267 |
Target: 5'- -gCCGCcGGCgGCGAGGAUGCGGacGGCg -3' miRNA: 3'- ggGGCGaCCG-CGUUUUUAUGUUa-UCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 66544 | 0.71 | 0.972683 |
Target: 5'- gCCCGCUGGaCGCGugcgccuacUGCGGcAGCg -3' miRNA: 3'- gGGGCGACC-GCGUuuuu-----AUGUUaUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 76595 | 0.71 | 0.973264 |
Target: 5'- gCCgCCGCUGGCggcgGCGAAGAccGCGGcGGCc -3' miRNA: 3'- -GG-GGCGACCG----CGUUUUUa-UGUUaUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 29252 | 0.71 | 0.976036 |
Target: 5'- gCCCCGCggccGCGCAcgGAcUAC-GUGGCg -3' miRNA: 3'- -GGGGCGac--CGCGUuuUU-AUGuUAUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 134794 | 0.71 | 0.978591 |
Target: 5'- gCCCCGg-GGCGCGAAgcccggGAgggACGcgGGCg -3' miRNA: 3'- -GGGGCgaCCGCGUUU------UUa--UGUuaUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 4549 | 0.71 | 0.978591 |
Target: 5'- gCCCGCgggUGGCGCGgcgugGAAGUGgaAGUGGUg -3' miRNA: 3'- gGGGCG---ACCGCGU-----UUUUAUg-UUAUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 29721 | 0.71 | 0.980939 |
Target: 5'- -aCUGC-GGCGCGGGA--GCGGUGGCc -3' miRNA: 3'- ggGGCGaCCGCGUUUUuaUGUUAUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 34049 | 0.71 | 0.980939 |
Target: 5'- gCCCCGC-GGCGCGcgcguuuuucGAGggGCAcgcggagcgcGUGGCg -3' miRNA: 3'- -GGGGCGaCCGCGU----------UUUuaUGU----------UAUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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