miRNA display CGI


Results 121 - 140 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 73886 0.7 0.990709
Target:  5'- uUCCGCcGGCGCcccgcgcaGCGAUGGCc -3'
miRNA:   3'- gGGGCGaCCGCGuuuuua--UGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 99244 0.7 0.991091
Target:  5'- -gCCGCUcguugucgcagccGGCGCGGGAGUAUAuuuGCg -3'
miRNA:   3'- ggGGCGA-------------CCGCGUUUUUAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 10938 0.7 0.985785
Target:  5'- gCCgGCUGGCGCGGcuggccuuugcgcauAuGUAC-GUGGCg -3'
miRNA:   3'- gGGgCGACCGCGUU---------------UuUAUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 123595 0.7 0.985051
Target:  5'- aCCCGCUgGGCGCAcuccAGAcGCGAacgcAGCa -3'
miRNA:   3'- gGGGCGA-CCGCGUu---UUUaUGUUa---UCG- -5'
6487 3' -47.4 NC_001847.1 + 78061 0.7 0.985051
Target:  5'- cCCUCGCggccacgacGGCGCAGGAGUccggGCGGcGGCc -3'
miRNA:   3'- -GGGGCGa--------CCGCGUUUUUA----UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 66544 0.71 0.972683
Target:  5'- gCCCGCUGGaCGCGugcgccuacUGCGGcAGCg -3'
miRNA:   3'- gGGGCGACC-GCGUuuuu-----AUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 76595 0.71 0.973264
Target:  5'- gCCgCCGCUGGCggcgGCGAAGAccGCGGcGGCc -3'
miRNA:   3'- -GG-GGCGACCG----CGUUUUUa-UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 29252 0.71 0.976036
Target:  5'- gCCCCGCggccGCGCAcgGAcUAC-GUGGCg -3'
miRNA:   3'- -GGGGCGac--CGCGUuuUU-AUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 134794 0.71 0.978591
Target:  5'- gCCCCGg-GGCGCGAAgcccggGAgggACGcgGGCg -3'
miRNA:   3'- -GGGGCgaCCGCGUUU------UUa--UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 4549 0.71 0.978591
Target:  5'- gCCCGCgggUGGCGCGgcgugGAAGUGgaAGUGGUg -3'
miRNA:   3'- gGGGCG---ACCGCGU-----UUUUAUg-UUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 29721 0.71 0.980939
Target:  5'- -aCUGC-GGCGCGGGA--GCGGUGGCc -3'
miRNA:   3'- ggGGCGaCCGCGUUUUuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 34049 0.71 0.980939
Target:  5'- gCCCCGC-GGCGCGcgcguuuuucGAGggGCAcgcggagcgcGUGGCg -3'
miRNA:   3'- -GGGGCGaCCGCGU----------UUUuaUGU----------UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 54810 0.7 0.991215
Target:  5'- gCCgCGCUGGCgaGCGcgGGcACGGUGGUg -3'
miRNA:   3'- -GGgGCGACCG--CGUuuUUaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 90010 0.71 0.980939
Target:  5'- aCCCCGCagaaGGCGCcGAGcUGCAccuGCg -3'
miRNA:   3'- -GGGGCGa---CCGCGuUUUuAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 28056 0.71 0.982883
Target:  5'- gCgCUGCUGGCGgAAAAccugcccggucugGUGCuGUGGCg -3'
miRNA:   3'- -GgGGCGACCGCgUUUU-------------UAUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 6110 0.71 0.983089
Target:  5'- gCCCGCgaGGCGCG-----GCGcgAGCg -3'
miRNA:   3'- gGGGCGa-CCGCGUuuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 50040 0.71 0.983089
Target:  5'- gCCCGCggGGCGCGGug--GCGGccGCg -3'
miRNA:   3'- gGGGCGa-CCGCGUUuuuaUGUUauCG- -5'
6487 3' -47.4 NC_001847.1 + 81328 0.7 0.984482
Target:  5'- cCCCCGCUccggcgcgccagggGGCGCAGAccuccucGCGGcGGCu -3'
miRNA:   3'- -GGGGCGA--------------CCGCGUUUuua----UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 43142 0.7 0.984673
Target:  5'- gCCCGCgGGCGCugcgcccGCAGUcgcuGGCg -3'
miRNA:   3'- gGGGCGaCCGCGuuuuua-UGUUA----UCG- -5'
6487 3' -47.4 NC_001847.1 + 130177 0.7 0.985051
Target:  5'- gCCCCaGCUgcccccccGGCGCGc----GCGAUAGCg -3'
miRNA:   3'- -GGGG-CGA--------CCGCGUuuuuaUGUUAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.