miRNA display CGI


Results 141 - 160 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 52380 0.7 0.988449
Target:  5'- gCgCGCUGGCGCAGAcg-GCcGUcuacGGCg -3'
miRNA:   3'- gGgGCGACCGCGUUUuuaUGuUA----UCG- -5'
6487 3' -47.4 NC_001847.1 + 42792 0.7 0.988449
Target:  5'- gCCUCGC-GGCGCcgcccuGUGCcGUGGCc -3'
miRNA:   3'- -GGGGCGaCCGCGuuuu--UAUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 81328 0.7 0.984482
Target:  5'- cCCCCGCUccggcgcgccagggGGCGCAGAccuccucGCGGcGGCu -3'
miRNA:   3'- -GGGGCGA--------------CCGCGUUUuua----UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 50040 0.71 0.983089
Target:  5'- gCCCGCggGGCGCGGug--GCGGccGCg -3'
miRNA:   3'- gGGGCGa-CCGCGUUuuuaUGUUauCG- -5'
6487 3' -47.4 NC_001847.1 + 6110 0.71 0.983089
Target:  5'- gCCCGCgaGGCGCG-----GCGcgAGCg -3'
miRNA:   3'- gGGGCGa-CCGCGUuuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 28056 0.71 0.982883
Target:  5'- gCgCUGCUGGCGgAAAAccugcccggucugGUGCuGUGGCg -3'
miRNA:   3'- -GgGGCGACCGCgUUUU-------------UAUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 90010 0.71 0.980939
Target:  5'- aCCCCGCagaaGGCGCcGAGcUGCAccuGCg -3'
miRNA:   3'- -GGGGCGa---CCGCGuUUUuAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 34049 0.71 0.980939
Target:  5'- gCCCCGC-GGCGCGcgcguuuuucGAGggGCAcgcggagcgcGUGGCg -3'
miRNA:   3'- -GGGGCGaCCGCGU----------UUUuaUGU----------UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 29721 0.71 0.980939
Target:  5'- -aCUGC-GGCGCGGGA--GCGGUGGCc -3'
miRNA:   3'- ggGGCGaCCGCGUUUUuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 4549 0.71 0.978591
Target:  5'- gCCCGCgggUGGCGCGgcgugGAAGUGgaAGUGGUg -3'
miRNA:   3'- gGGGCG---ACCGCGU-----UUUUAUg-UUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 43142 0.7 0.984673
Target:  5'- gCCCGCgGGCGCugcgcccGCAGUcgcuGGCg -3'
miRNA:   3'- gGGGCGaCCGCGuuuuua-UGUUA----UCG- -5'
6487 3' -47.4 NC_001847.1 + 130177 0.7 0.985051
Target:  5'- gCCCCaGCUgcccccccGGCGCGc----GCGAUAGCg -3'
miRNA:   3'- -GGGG-CGA--------CCGCGUuuuuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 8863 0.7 0.988449
Target:  5'- -gCUGCUGGCGCAAuuggGCcccagAGCg -3'
miRNA:   3'- ggGGCGACCGCGUUuuuaUGuua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 2328 0.7 0.988449
Target:  5'- gCCCGCU-GCGCGGAAcccgccguuuUGCAcgGGCc -3'
miRNA:   3'- gGGGCGAcCGCGUUUUu---------AUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 118748 0.7 0.986834
Target:  5'- gCCCCGCgcGGCugcgcgagcggGCGAAcAUGCAAgGGCc -3'
miRNA:   3'- -GGGGCGa-CCG-----------CGUUUuUAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 73835 0.7 0.986834
Target:  5'- gCCCCGCgcacccGCGCAAAAaacgccgccgcgGUGCGcggGGCg -3'
miRNA:   3'- -GGGGCGac----CGCGUUUU------------UAUGUua-UCG- -5'
6487 3' -47.4 NC_001847.1 + 51147 0.7 0.986834
Target:  5'- cUCUCGCUGGCGCuGGAcccGUACucgacGGCc -3'
miRNA:   3'- -GGGGCGACCGCGuUUU---UAUGuua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 10938 0.7 0.985785
Target:  5'- gCCgGCUGGCGCGGcuggccuuugcgcauAuGUAC-GUGGCg -3'
miRNA:   3'- gGGgCGACCGCGUU---------------UuUAUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 123595 0.7 0.985051
Target:  5'- aCCCGCUgGGCGCAcuccAGAcGCGAacgcAGCa -3'
miRNA:   3'- gGGGCGA-CCGCGUu---UUUaUGUUa---UCG- -5'
6487 3' -47.4 NC_001847.1 + 78061 0.7 0.985051
Target:  5'- cCCUCGCggccacgacGGCGCAGGAGUccggGCGGcGGCc -3'
miRNA:   3'- -GGGGCGa--------CCGCGUUUUUA----UGUUaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.