miRNA display CGI


Results 61 - 80 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 14765 0.66 0.999389
Target:  5'- gCCCGC-GGCGUGGuAGcGCAGcAGCu -3'
miRNA:   3'- gGGGCGaCCGCGUUuUUaUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 51616 0.66 0.999389
Target:  5'- aCCCCGgggcGGCGCAcgGAccGCAGgaaGGCa -3'
miRNA:   3'- -GGGGCga--CCGCGUuuUUa-UGUUa--UCG- -5'
6487 3' -47.4 NC_001847.1 + 78295 0.66 0.99976
Target:  5'- -gCCGCcgGGCGCAGAcg-GCGcgGcGCg -3'
miRNA:   3'- ggGGCGa-CCGCGUUUuuaUGUuaU-CG- -5'
6487 3' -47.4 NC_001847.1 + 54940 0.66 0.99976
Target:  5'- gCCCUGCgcuucgcGGCGCAcccgcccGCAGaGGCg -3'
miRNA:   3'- -GGGGCGa------CCGCGUuuuua--UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 29508 0.66 0.999694
Target:  5'- gCCCGCcGGCG--GAGGUGCc--GGCg -3'
miRNA:   3'- gGGGCGaCCGCguUUUUAUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 31365 0.66 0.99963
Target:  5'- gCCCCGCcggcccgggugccGGCGCAGucguccccggGCGcgGGCu -3'
miRNA:   3'- -GGGGCGa------------CCGCGUUuuua------UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 90055 0.66 0.999612
Target:  5'- cCCCCGUcccGGCGCAc-----CAcgAGCa -3'
miRNA:   3'- -GGGGCGa--CCGCGUuuuuauGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 40275 0.66 0.999574
Target:  5'- uCCUCGaaGGUGCGGAuguugacaaagguGUACAcggGUAGCg -3'
miRNA:   3'- -GGGGCgaCCGCGUUUu------------UAUGU---UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 80338 0.66 0.999511
Target:  5'- gCCCgCGCUcgccagcgcGGCGCGGAAGgcgcgGCGu--GCg -3'
miRNA:   3'- -GGG-GCGA---------CCGCGUUUUUa----UGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 19393 0.66 0.999511
Target:  5'- uCCCCGCUcGGCuccGCGGcGAcGCAGcaGGCa -3'
miRNA:   3'- -GGGGCGA-CCG---CGUUuUUaUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 79400 0.67 0.9983
Target:  5'- gCCgCGCgGGCGCGAgccgGAccACcGUGGCg -3'
miRNA:   3'- -GGgGCGaCCGCGUU----UUuaUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 103663 0.67 0.9983
Target:  5'- -aCCGCgucgccGGCGCGAAAG-ACAccgacgcccAUGGCg -3'
miRNA:   3'- ggGGCGa-----CCGCGUUUUUaUGU---------UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 113960 0.67 0.999241
Target:  5'- aCgCCGCcgGGCGCGucgccGCAGaAGCg -3'
miRNA:   3'- -GgGGCGa-CCGCGUuuuuaUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 58886 0.67 0.999241
Target:  5'- gUCUCGUUGGCGa---GGUGCGccuccAUGGCg -3'
miRNA:   3'- -GGGGCGACCGCguuuUUAUGU-----UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 95822 0.67 0.999063
Target:  5'- aCCCgGCUcGGCGgCAGGG--GCAAgccaGGCa -3'
miRNA:   3'- -GGGgCGA-CCGC-GUUUUuaUGUUa---UCG- -5'
6487 3' -47.4 NC_001847.1 + 11472 0.67 0.999063
Target:  5'- gUCUCGCUGuCGCuuucgcUAUAAUAGCa -3'
miRNA:   3'- -GGGGCGACcGCGuuuuu-AUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 86344 0.67 0.99885
Target:  5'- uCCCCGaUGGCGCcg----GCGA-GGCg -3'
miRNA:   3'- -GGGGCgACCGCGuuuuuaUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 37615 0.67 0.99885
Target:  5'- --aCGCUGGC-CAA--GUACAccAUAGCg -3'
miRNA:   3'- gggGCGACCGcGUUuuUAUGU--UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 76559 0.67 0.998598
Target:  5'- gCCCGC--GCGCAAAGcgGCccgcuUAGCu -3'
miRNA:   3'- gGGGCGacCGCGUUUUuaUGuu---AUCG- -5'
6487 3' -47.4 NC_001847.1 + 95301 0.67 0.998598
Target:  5'- -gCCGCUGGCGCcuccagGCGc-GGCg -3'
miRNA:   3'- ggGGCGACCGCGuuuuuaUGUuaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.