miRNA display CGI


Results 81 - 100 of 410 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 69622 0.67 0.999241
Target:  5'- cCCUCGgUGaGCGCGGAGA-GCGcgAGUc -3'
miRNA:   3'- -GGGGCgAC-CGCGUUUUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 131220 0.67 0.999063
Target:  5'- gCCCGCUGccaGCGCu---GUGCGu--GCg -3'
miRNA:   3'- gGGGCGAC---CGCGuuuuUAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 73520 0.67 0.999063
Target:  5'- gUCCaGCgGGCGCAu--GUACGugGGCa -3'
miRNA:   3'- -GGGgCGaCCGCGUuuuUAUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 15322 0.67 0.999003
Target:  5'- -gCCGCgGGCGUAGcgggggcgggcgggGGGUGCGugAUGGCu -3'
miRNA:   3'- ggGGCGaCCGCGUU--------------UUUAUGU--UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 56358 0.67 0.99885
Target:  5'- gCUCCGCgGGCGCGGGcg-GCAcgaccucGGCg -3'
miRNA:   3'- -GGGGCGaCCGCGUUUuuaUGUua-----UCG- -5'
6487 3' -47.4 NC_001847.1 + 76559 0.67 0.998598
Target:  5'- gCCCGC--GCGCAAAGcgGCccgcuUAGCu -3'
miRNA:   3'- gGGGCGacCGCGUUUUuaUGuu---AUCG- -5'
6487 3' -47.4 NC_001847.1 + 95301 0.67 0.998598
Target:  5'- -gCCGCUGGCGCcuccagGCGc-GGCg -3'
miRNA:   3'- ggGGCGACCGCGuuuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 19393 0.66 0.999511
Target:  5'- uCCCCGCUcGGCuccGCGGcGAcGCAGcaGGCa -3'
miRNA:   3'- -GGGGCGA-CCG---CGUUuUUaUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 80338 0.66 0.999511
Target:  5'- gCCCgCGCUcgccagcgcGGCGCGGAAGgcgcgGCGu--GCg -3'
miRNA:   3'- -GGG-GCGA---------CCGCGUUUUUa----UGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 40275 0.66 0.999574
Target:  5'- uCCUCGaaGGUGCGGAuguugacaaagguGUACAcggGUAGCg -3'
miRNA:   3'- -GGGGCgaCCGCGUUUu------------UAUGU---UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 94396 0.68 0.99795
Target:  5'- --aCGCUuuuuucggaucGGCGCAAuuGUGCGAUcGCa -3'
miRNA:   3'- gggGCGA-----------CCGCGUUuuUAUGUUAuCG- -5'
6487 3' -47.4 NC_001847.1 + 15213 0.68 0.997912
Target:  5'- aCCgCGCcGGCGCGuauagacGAAGUACGcgccGGCg -3'
miRNA:   3'- -GGgGCGaCCGCGU-------UUUUAUGUua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 128797 0.68 0.997541
Target:  5'- gCCCGC-GGCGCGGu--UGCcgccggGGCa -3'
miRNA:   3'- gGGGCGaCCGCGUUuuuAUGuua---UCG- -5'
6487 3' -47.4 NC_001847.1 + 66354 0.68 0.997068
Target:  5'- gCCCGCUcGCGCGGccgccgcgGCGAUGGa -3'
miRNA:   3'- gGGGCGAcCGCGUUuuua----UGUUAUCg -5'
6487 3' -47.4 NC_001847.1 + 13792 0.68 0.997068
Target:  5'- aCCCCGCccgccGCGCAGAAAccaagacacACGcgAGCg -3'
miRNA:   3'- -GGGGCGac---CGCGUUUUUa--------UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 78295 0.66 0.99976
Target:  5'- -gCCGCcgGGCGCAGAcg-GCGcgGcGCg -3'
miRNA:   3'- ggGGCGa-CCGCGUUUuuaUGUuaU-CG- -5'
6487 3' -47.4 NC_001847.1 + 54940 0.66 0.99976
Target:  5'- gCCCUGCgcuucgcGGCGCAcccgcccGCAGaGGCg -3'
miRNA:   3'- -GGGGCGa------CCGCGUuuuua--UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 29508 0.66 0.999694
Target:  5'- gCCCGCcGGCG--GAGGUGCc--GGCg -3'
miRNA:   3'- gGGGCGaCCGCguUUUUAUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 31365 0.66 0.99963
Target:  5'- gCCCCGCcggcccgggugccGGCGCAGucguccccggGCGcgGGCu -3'
miRNA:   3'- -GGGGCGa------------CCGCGUUuuua------UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 90055 0.66 0.999612
Target:  5'- cCCCCGUcccGGCGCAc-----CAcgAGCa -3'
miRNA:   3'- -GGGGCGa--CCGCGUuuuuauGUuaUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.