miRNA display CGI


Results 101 - 120 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 27670 0.68 0.997497
Target:  5'- gCCCUGCUcgacgcGGCGCGucgggcuGAGGcGCGcgAGCg -3'
miRNA:   3'- -GGGGCGA------CCGCGU-------UUUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 134521 0.68 0.99652
Target:  5'- -gCCGC-GGCGCAugugguGGUACAcggGGCg -3'
miRNA:   3'- ggGGCGaCCGCGUuu----UUAUGUua-UCG- -5'
6487 3' -47.4 NC_001847.1 + 61879 0.68 0.99652
Target:  5'- gCCCGCgggGGUugcacggcgaGCGGAAGUACGcgAGg -3'
miRNA:   3'- gGGGCGa--CCG----------CGUUUUUAUGUuaUCg -5'
6487 3' -47.4 NC_001847.1 + 70977 0.68 0.99652
Target:  5'- gCCCCGUccGCGCAAGcggccUGCA-UGGCg -3'
miRNA:   3'- -GGGGCGacCGCGUUUuu---AUGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 14584 0.68 0.99652
Target:  5'- gCCCUGagucuauugGGCGCGGAuggGCGAUGGa -3'
miRNA:   3'- -GGGGCga-------CCGCGUUUuuaUGUUAUCg -5'
6487 3' -47.4 NC_001847.1 + 15322 0.67 0.999003
Target:  5'- -gCCGCgGGCGUAGcgggggcgggcgggGGGUGCGugAUGGCu -3'
miRNA:   3'- ggGGCGaCCGCGUU--------------UUUAUGU--UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 73520 0.67 0.999063
Target:  5'- gUCCaGCgGGCGCAu--GUACGugGGCa -3'
miRNA:   3'- -GGGgCGaCCGCGUuuuUAUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 78295 0.66 0.99976
Target:  5'- -gCCGCcgGGCGCAGAcg-GCGcgGcGCg -3'
miRNA:   3'- ggGGCGa-CCGCGUUUuuaUGUuaU-CG- -5'
6487 3' -47.4 NC_001847.1 + 54940 0.66 0.99976
Target:  5'- gCCCUGCgcuucgcGGCGCAcccgcccGCAGaGGCg -3'
miRNA:   3'- -GGGGCGa------CCGCGUuuuua--UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 29508 0.66 0.999694
Target:  5'- gCCCGCcGGCG--GAGGUGCc--GGCg -3'
miRNA:   3'- gGGGCGaCCGCguUUUUAUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 31365 0.66 0.99963
Target:  5'- gCCCCGCcggcccgggugccGGCGCAGucguccccggGCGcgGGCu -3'
miRNA:   3'- -GGGGCGa------------CCGCGUUuuua------UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 90055 0.66 0.999612
Target:  5'- cCCCCGUcccGGCGCAc-----CAcgAGCa -3'
miRNA:   3'- -GGGGCGa--CCGCGUuuuuauGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 40275 0.66 0.999574
Target:  5'- uCCUCGaaGGUGCGGAuguugacaaagguGUACAcggGUAGCg -3'
miRNA:   3'- -GGGGCgaCCGCGUUUu------------UAUGU---UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 80338 0.66 0.999511
Target:  5'- gCCCgCGCUcgccagcgcGGCGCGGAAGgcgcgGCGu--GCg -3'
miRNA:   3'- -GGG-GCGA---------CCGCGUUUUUa----UGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 19393 0.66 0.999511
Target:  5'- uCCCCGCUcGGCuccGCGGcGAcGCAGcaGGCa -3'
miRNA:   3'- -GGGGCGA-CCG---CGUUuUUaUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 134650 0.66 0.999389
Target:  5'- gCCgGCagcaGGCGCGGAG--GCGcgGGCa -3'
miRNA:   3'- gGGgCGa---CCGCGUUUUuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 53584 0.66 0.999389
Target:  5'- gCCCCGCgcagcuGCGCGGGGccgGCGAgcucGGCc -3'
miRNA:   3'- -GGGGCGac----CGCGUUUUua-UGUUa---UCG- -5'
6487 3' -47.4 NC_001847.1 + 31699 0.66 0.999389
Target:  5'- gCCUCGggGGCGgGGGGAgGCGcgGGCc -3'
miRNA:   3'- -GGGGCgaCCGCgUUUUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 69622 0.67 0.999241
Target:  5'- cCCUCGgUGaGCGCGGAGA-GCGcgAGUc -3'
miRNA:   3'- -GGGGCgAC-CGCGUUUUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 131220 0.67 0.999063
Target:  5'- gCCCGCUGccaGCGCu---GUGCGu--GCg -3'
miRNA:   3'- gGGGCGAC---CGCGuuuuUAUGUuauCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.