miRNA display CGI


Results 121 - 140 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 68826 0.66 0.999612
Target:  5'- aCCCGCcgcagGGCGCcgcGAAGaGCucgGGCg -3'
miRNA:   3'- gGGGCGa----CCGCGu--UUUUaUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 50799 0.66 0.999511
Target:  5'- aCCUCGC-GGCGCugcggccGGUACGGUuuuacgggggGGCg -3'
miRNA:   3'- -GGGGCGaCCGCGuuu----UUAUGUUA----------UCG- -5'
6487 3' -47.4 NC_001847.1 + 83141 0.68 0.99652
Target:  5'- gCCgCCGCggcgucgGGCGCGuccgcGAUGCGccGGCg -3'
miRNA:   3'- -GG-GGCGa------CCGCGUuu---UUAUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 94985 0.68 0.99652
Target:  5'- cCCCCGCggcuuUGGCGCAGc--UGCGc--GCa -3'
miRNA:   3'- -GGGGCG-----ACCGCGUUuuuAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 61483 0.68 0.997068
Target:  5'- gCgUCGCUGGCGCAcAGcgGCG--GGUa -3'
miRNA:   3'- -GgGGCGACCGCGUuUUuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 131163 0.66 0.999389
Target:  5'- gCCgCGCUGGCGCugcuc-ACGGcccaccucgcgcUGGCg -3'
miRNA:   3'- -GGgGCGACCGCGuuuuuaUGUU------------AUCG- -5'
6487 3' -47.4 NC_001847.1 + 16704 0.66 0.999389
Target:  5'- gCCgGCaGGCGCAGacGAGcACGAUcaccAGCg -3'
miRNA:   3'- gGGgCGaCCGCGUU--UUUaUGUUA----UCG- -5'
6487 3' -47.4 NC_001847.1 + 113960 0.67 0.999241
Target:  5'- aCgCCGCcgGGCGCGucgccGCAGaAGCg -3'
miRNA:   3'- -GgGGCGa-CCGCGUuuuuaUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 88389 0.67 0.999241
Target:  5'- gCCCCGCgcggcgggcgGGCGCGccgucGGGUACcagggGGCc -3'
miRNA:   3'- -GGGGCGa---------CCGCGUu----UUUAUGuua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 95822 0.67 0.999063
Target:  5'- aCCCgGCUcGGCGgCAGGG--GCAAgccaGGCa -3'
miRNA:   3'- -GGGgCGA-CCGC-GUUUUuaUGUUa---UCG- -5'
6487 3' -47.4 NC_001847.1 + 5442 0.67 0.999063
Target:  5'- cCCCUGCgUGuuGCccGAcgGCGGUGGCg -3'
miRNA:   3'- -GGGGCG-ACcgCGuuUUuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 86344 0.67 0.99885
Target:  5'- uCCCCGaUGGCGCcg----GCGA-GGCg -3'
miRNA:   3'- -GGGGCgACCGCGuuuuuaUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 50381 0.67 0.99885
Target:  5'- gCCCUGCUGGcCGUGGccAUGCucguGCu -3'
miRNA:   3'- -GGGGCGACC-GCGUUuuUAUGuuauCG- -5'
6487 3' -47.4 NC_001847.1 + 76559 0.67 0.998598
Target:  5'- gCCCGC--GCGCAAAGcgGCccgcuUAGCu -3'
miRNA:   3'- gGGGCGacCGCGUUUUuaUGuu---AUCG- -5'
6487 3' -47.4 NC_001847.1 + 69924 0.67 0.998598
Target:  5'- cCCCCGUUaaaGGCGguAAucAUGCGcacguUGGCg -3'
miRNA:   3'- -GGGGCGA---CCGCguUUu-UAUGUu----AUCG- -5'
6487 3' -47.4 NC_001847.1 + 103663 0.67 0.9983
Target:  5'- -aCCGCgucgccGGCGCGAAAG-ACAccgacgcccAUGGCg -3'
miRNA:   3'- ggGGCGa-----CCGCGUUUUUaUGU---------UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 17458 0.68 0.997987
Target:  5'- gUCCCGCggucguacaggccggGGCGCA---GUAC--UAGCg -3'
miRNA:   3'- -GGGGCGa--------------CCGCGUuuuUAUGuuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 30758 0.68 0.99795
Target:  5'- gCgCGCUGGCGCGcgccGUGC--UGGCc -3'
miRNA:   3'- gGgGCGACCGCGUuuu-UAUGuuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 61434 0.68 0.997794
Target:  5'- gCCCGCggccgcgccgccgGGCGCGGcGAgGCGGUcGCg -3'
miRNA:   3'- gGGGCGa------------CCGCGUUuUUaUGUUAuCG- -5'
6487 3' -47.4 NC_001847.1 + 70837 0.68 0.997541
Target:  5'- uCCCCGUaaGGCGaucggggcGAAAUGCAGcgAGCg -3'
miRNA:   3'- -GGGGCGa-CCGCgu------UUUUAUGUUa-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.