miRNA display CGI


Results 1 - 20 of 410 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 69425 0.66 0.999389
Target:  5'- uUCCUGC-GGCuCAGcGcgGCGGUGGCg -3'
miRNA:   3'- -GGGGCGaCCGcGUUuUuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 31441 0.66 0.999389
Target:  5'- aCgUCGCUGGCGCu--GGUGaucgugGGCg -3'
miRNA:   3'- -GgGGCGACCGCGuuuUUAUguua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 60842 0.66 0.999511
Target:  5'- gCCCGC-GGCGCugcgcgGCGccagGGCg -3'
miRNA:   3'- gGGGCGaCCGCGuuuuuaUGUua--UCG- -5'
6487 3' -47.4 NC_001847.1 + 60742 0.66 0.999389
Target:  5'- --gCGCgGGCGCGGc---GCGGUGGCg -3'
miRNA:   3'- gggGCGaCCGCGUUuuuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 48127 0.66 0.999511
Target:  5'- gUCCCGCgaGGCGCGGcccAGGUAaccgccgGGCc -3'
miRNA:   3'- -GGGGCGa-CCGCGUU---UUUAUguua---UCG- -5'
6487 3' -47.4 NC_001847.1 + 114859 0.66 0.999511
Target:  5'- aCCaaaCGCcGGCGCu-GGGUGCGgccuuuaaaggAUAGCa -3'
miRNA:   3'- -GGg--GCGaCCGCGuuUUUAUGU-----------UAUCG- -5'
6487 3' -47.4 NC_001847.1 + 35302 0.66 0.999511
Target:  5'- gCCCCGCcgagcGGCGCGcgcuGGAaGCG--GGCg -3'
miRNA:   3'- -GGGGCGa----CCGCGUu---UUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 2611 0.66 0.999612
Target:  5'- gCCCGCc-GCGCcGGAGGUGCuucGGCg -3'
miRNA:   3'- gGGGCGacCGCG-UUUUUAUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 32326 0.66 0.999389
Target:  5'- aCCCGCUGGaacaCGCGAu----CGcgGGCc -3'
miRNA:   3'- gGGGCGACC----GCGUUuuuauGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 134512 0.66 0.999389
Target:  5'- gCCUCGggGGCGgGGGGAgGCGcgGGCc -3'
miRNA:   3'- -GGGGCgaCCGCgUUUUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 124428 0.66 0.999489
Target:  5'- aCUCGCUGGCgGCGcuuggccgGCGcgGGCc -3'
miRNA:   3'- gGGGCGACCG-CGUuuuua---UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 43276 0.66 0.999603
Target:  5'- aCCUGCUGcgacgccgcgcguGCGCGggcugcGGAGUACGA-AGCg -3'
miRNA:   3'- gGGGCGAC-------------CGCGU------UUUUAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 51963 0.66 0.999389
Target:  5'- aCCCCGC-GGCagugauGCAcuGGGUGCGccGGCg -3'
miRNA:   3'- -GGGGCGaCCG------CGUu-UUUAUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 33962 0.66 0.999612
Target:  5'- aCCCgagcgCGCUGGCGCcgggc-GCGcUGGCc -3'
miRNA:   3'- -GGG-----GCGACCGCGuuuuuaUGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 54580 0.66 0.999389
Target:  5'- gCCCCGCgGGCu--GGGcgGCGcUGGCg -3'
miRNA:   3'- -GGGGCGaCCGcguUUUuaUGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 44 0.66 0.999389
Target:  5'- uUCCGCgcGGCGCGugcauUGCGGcgGGCg -3'
miRNA:   3'- gGGGCGa-CCGCGUuuuu-AUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 50757 0.66 0.999612
Target:  5'- gCCCCGguUUGGCGCGccAAcGCGG-AGCc -3'
miRNA:   3'- -GGGGC--GACCGCGUuuUUaUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 30382 0.66 0.999389
Target:  5'- --gCGCUGGUGCGggcgcAGAcgGCGcUGGCg -3'
miRNA:   3'- gggGCGACCGCGU-----UUUuaUGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 41023 0.66 0.999511
Target:  5'- gUCCUGCaacgGGCGCGccGcgGCGuuUAGCa -3'
miRNA:   3'- -GGGGCGa---CCGCGUuuUuaUGUu-AUCG- -5'
6487 3' -47.4 NC_001847.1 + 18120 0.66 0.999511
Target:  5'- cCCCCGCcGG-GCAG----ACAggAGCg -3'
miRNA:   3'- -GGGGCGaCCgCGUUuuuaUGUuaUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.