Results 1 - 20 of 410 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6487 | 3' | -47.4 | NC_001847.1 | + | 127086 | 1.16 | 0.006948 |
Target: 5'- cCCCCGCUGGCGCAAAAAUACAAUAGCu -3' miRNA: 3'- -GGGGCGACCGCGUUUUUAUGUUAUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 24273 | 1.16 | 0.006948 |
Target: 5'- cCCCCGCUGGCGCAAAAAUACAAUAGCu -3' miRNA: 3'- -GGGGCGACCGCGUUUUUAUGUUAUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 67322 | 0.86 | 0.354242 |
Target: 5'- gCCCCGCcGGCGUAuAGGUGCAGcAGCa -3' miRNA: 3'- -GGGGCGaCCGCGUuUUUAUGUUaUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 46855 | 0.83 | 0.526416 |
Target: 5'- cCCCCGC-GGCGCAAGgccAGUGCAA-AGCc -3' miRNA: 3'- -GGGGCGaCCGCGUUU---UUAUGUUaUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 116428 | 0.81 | 0.608288 |
Target: 5'- gCCCGCUGGCGCuccccgcgGCGcUGGCg -3' miRNA: 3'- gGGGCGACCGCGuuuuua--UGUuAUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 9030 | 0.78 | 0.752603 |
Target: 5'- cCCCUGCUagacgcgaugcGGCGCGAGGggGCAAUGGa -3' miRNA: 3'- -GGGGCGA-----------CCGCGUUUUuaUGUUAUCg -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 32046 | 0.78 | 0.752603 |
Target: 5'- cCCCCGCgaaagguccggGGCGCGGAGAcgGCGggGGCc -3' miRNA: 3'- -GGGGCGa----------CCGCGUUUUUa-UGUuaUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 71593 | 0.77 | 0.802295 |
Target: 5'- gCgCGCUGGCGCGGcugguGAUGCAAU-GCg -3' miRNA: 3'- gGgGCGACCGCGUUu----UUAUGUUAuCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 11860 | 0.77 | 0.802295 |
Target: 5'- gCCCUGCgggcGGCGCGAGcGUAUAAaAGCc -3' miRNA: 3'- -GGGGCGa---CCGCGUUUuUAUGUUaUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 35710 | 0.77 | 0.811747 |
Target: 5'- uCCCaCGCUGGCGCAGcguAUGC---GGCu -3' miRNA: 3'- -GGG-GCGACCGCGUUuu-UAUGuuaUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 122544 | 0.77 | 0.820095 |
Target: 5'- aCCCugccgguCGCUGGcCGCAcGAGUGCGAgGGCg -3' miRNA: 3'- -GGG-------GCGACC-GCGUuUUUAUGUUaUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 105225 | 0.77 | 0.821012 |
Target: 5'- aCCCGCgGGCGCGcgGGcACAGgcgGGCg -3' miRNA: 3'- gGGGCGaCCGCGUuuUUaUGUUa--UCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 50064 | 0.77 | 0.821012 |
Target: 5'- gCCUGCUGGCGCu--GAU-CAuUGGCa -3' miRNA: 3'- gGGGCGACCGCGuuuUUAuGUuAUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 123703 | 0.77 | 0.830081 |
Target: 5'- -gCCGCUGGCGCGGGGucgcACGGcAGCa -3' miRNA: 3'- ggGGCGACCGCGUUUUua--UGUUaUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 68749 | 0.76 | 0.838944 |
Target: 5'- aCCCCGUUGuGCGCGAcGAcGCuGUGGUa -3' miRNA: 3'- -GGGGCGAC-CGCGUUuUUaUGuUAUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 34931 | 0.76 | 0.838944 |
Target: 5'- gCCgCCGCUGGCGCAGcugcgcgGCAucgcGUGGUg -3' miRNA: 3'- -GG-GGCGACCGCGUUuuua---UGU----UAUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 73278 | 0.76 | 0.847591 |
Target: 5'- cCCCCGCgGGCGCucg---GCAGgcGCg -3' miRNA: 3'- -GGGGCGaCCGCGuuuuuaUGUUauCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 105976 | 0.76 | 0.856015 |
Target: 5'- gUCCGCguaguacgGGUGCAGGuuUGCGAUAGUg -3' miRNA: 3'- gGGGCGa-------CCGCGUUUuuAUGUUAUCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 10083 | 0.76 | 0.856015 |
Target: 5'- gCCCCGCcGcGCGCGGGAGcACAAgcGGCg -3' miRNA: 3'- -GGGGCGaC-CGCGUUUUUaUGUUa-UCG- -5' |
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6487 | 3' | -47.4 | NC_001847.1 | + | 110828 | 0.76 | 0.864206 |
Target: 5'- cCCCCGCgcgGGCa-AAAAAUcCAAUGGCg -3' miRNA: 3'- -GGGGCGa--CCGcgUUUUUAuGUUAUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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