miRNA display CGI


Results 1 - 20 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 8 0.7 0.991215
Target:  5'- cCCCCGCgcggggGGCGCGGAGAa-------- -3'
miRNA:   3'- -GGGGCGa-----CCGCGUUUUUauguuaucg -5'
6487 3' -47.4 NC_001847.1 + 44 0.66 0.999389
Target:  5'- uUCCGCgcGGCGCGugcauUGCGGcgGGCg -3'
miRNA:   3'- gGGGCGa-CCGCGUuuuu-AUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 922 0.69 0.995173
Target:  5'- gCCCGCcGGCGCcGGGAaGCccgAGCc -3'
miRNA:   3'- gGGGCGaCCGCGuUUUUaUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 1029 0.69 0.993231
Target:  5'- gCCCGC-GGCGCGccgcagcaGCAcgAGCg -3'
miRNA:   3'- gGGGCGaCCGCGUuuuua---UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 1431 0.66 0.999736
Target:  5'- gCCCCGCcaggcacuauuuGCGCucGGGUGCAuugAGCu -3'
miRNA:   3'- -GGGGCGac----------CGCGuuUUUAUGUua-UCG- -5'
6487 3' -47.4 NC_001847.1 + 1636 0.69 0.994356
Target:  5'- -aCCGC-GGCGCGcAGGUACAcguGCg -3'
miRNA:   3'- ggGGCGaCCGCGUuUUUAUGUuauCG- -5'
6487 3' -47.4 NC_001847.1 + 1980 0.66 0.999694
Target:  5'- gCCCGCgcaGGUagcagGCAGAAAagGCGcUAGCu -3'
miRNA:   3'- gGGGCGa--CCG-----CGUUUUUa-UGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 2328 0.7 0.988449
Target:  5'- gCCCGCU-GCGCGGAAcccgccguuuUGCAcgGGCc -3'
miRNA:   3'- gGGGCGAcCGCGUUUUu---------AUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 2611 0.66 0.999612
Target:  5'- gCCCGCc-GCGCcGGAGGUGCuucGGCg -3'
miRNA:   3'- gGGGCGacCGCG-UUUUUAUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 2781 0.67 0.9983
Target:  5'- cCCCCGCcGGCGgccucCAGGGccGCGAgcGCg -3'
miRNA:   3'- -GGGGCGaCCGC-----GUUUUuaUGUUauCG- -5'
6487 3' -47.4 NC_001847.1 + 3057 0.73 0.951646
Target:  5'- -gCCGCaGGCGCAGGuugugcucguAGUGCAGcAGCg -3'
miRNA:   3'- ggGGCGaCCGCGUUU----------UUAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 3141 0.66 0.99976
Target:  5'- gCCCCGCgagcaGCGUGGAGcaGCAGUuaacGCa -3'
miRNA:   3'- -GGGGCGac---CGCGUUUUuaUGUUAu---CG- -5'
6487 3' -47.4 NC_001847.1 + 3933 0.75 0.887317
Target:  5'- gCCCgCGCUGGCGCcgcg--GCGGggggGGCg -3'
miRNA:   3'- -GGG-GCGACCGCGuuuuuaUGUUa---UCG- -5'
6487 3' -47.4 NC_001847.1 + 4002 0.67 0.99885
Target:  5'- gCCCCGCggGGCGCcgg---GCcc-GGCg -3'
miRNA:   3'- -GGGGCGa-CCGCGuuuuuaUGuuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 4222 0.68 0.99652
Target:  5'- gCCCUGCgcggugccGGCGCGcgccgGCAcgAGCu -3'
miRNA:   3'- -GGGGCGa-------CCGCGUuuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 4549 0.71 0.978591
Target:  5'- gCCCGCgggUGGCGCGgcgugGAAGUGgaAGUGGUg -3'
miRNA:   3'- gGGGCG---ACCGCGU-----UUUUAUg-UUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 5442 0.67 0.999063
Target:  5'- cCCCUGCgUGuuGCccGAcgGCGGUGGCg -3'
miRNA:   3'- -GGGGCG-ACcgCGuuUUuaUGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 5663 0.75 0.894512
Target:  5'- gCCCGCccaGGCGCGAAGGUGgGccGGCc -3'
miRNA:   3'- gGGGCGa--CCGCGUUUUUAUgUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 6110 0.71 0.983089
Target:  5'- gCCCGCgaGGCGCG-----GCGcgAGCg -3'
miRNA:   3'- gGGGCGa-CCGCGUuuuuaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 6374 0.67 0.999063
Target:  5'- -gCCGCUgcGGCaGCAGAAGgcgGCAAgcGCc -3'
miRNA:   3'- ggGGCGA--CCG-CGUUUUUa--UGUUauCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.