miRNA display CGI


Results 1 - 20 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 3' -47.4 NC_001847.1 + 64463 0.74 0.932057
Target:  5'- gCCCGCggcGGCGCGGGGGgccgaaGCAGggAGCa -3'
miRNA:   3'- gGGGCGa--CCGCGUUUUUa-----UGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 110828 0.76 0.864206
Target:  5'- cCCCCGCgcgGGCa-AAAAAUcCAAUGGCg -3'
miRNA:   3'- -GGGGCGa--CCGcgUUUUUAuGUUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 46598 0.75 0.870587
Target:  5'- gCCCCGCcGGCGCGGccucgcggcGCAcgAGCg -3'
miRNA:   3'- -GGGGCGaCCGCGUUuuua-----UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 106746 0.75 0.887317
Target:  5'- gCCCgCGCUGGCGCcgcg--GCGGggggGGCg -3'
miRNA:   3'- -GGG-GCGACCGCGuuuuuaUGUUa---UCG- -5'
6487 3' -47.4 NC_001847.1 + 108476 0.75 0.894512
Target:  5'- gCCCGCccaGGCGCGAAGGUGgGccGGCc -3'
miRNA:   3'- gGGGCGa--CCGCGUUUUUAUgUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 72180 0.75 0.900079
Target:  5'- aCCCGCUGGUGCAGucgguc-GUGGUg -3'
miRNA:   3'- gGGGCGACCGCGUUuuuauguUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 134021 0.74 0.908109
Target:  5'- gCCgCCGCUGGUGCuGGAGgccGCGGcGGCg -3'
miRNA:   3'- -GG-GGCGACCGCGuUUUUa--UGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 51852 0.74 0.914506
Target:  5'- gCCgaGCUGGCGCAGuuuUACA-UGGCc -3'
miRNA:   3'- -GGggCGACCGCGUUuuuAUGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 72765 0.74 0.914506
Target:  5'- gUCCGCUGGCGCu--GAcGCAccAGCu -3'
miRNA:   3'- gGGGCGACCGCGuuuUUaUGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 10083 0.76 0.856015
Target:  5'- gCCCCGCcGcGCGCGGGAGcACAAgcGGCg -3'
miRNA:   3'- -GGGGCGaC-CGCGUUUUUaUGUUa-UCG- -5'
6487 3' -47.4 NC_001847.1 + 73278 0.76 0.847591
Target:  5'- cCCCCGCgGGCGCucg---GCAGgcGCg -3'
miRNA:   3'- -GGGGCGaCCGCGuuuuuaUGUUauCG- -5'
6487 3' -47.4 NC_001847.1 + 68749 0.76 0.838944
Target:  5'- aCCCCGUUGuGCGCGAcGAcGCuGUGGUa -3'
miRNA:   3'- -GGGGCGAC-CGCGUUuUUaUGuUAUCG- -5'
6487 3' -47.4 NC_001847.1 + 67322 0.86 0.354242
Target:  5'- gCCCCGCcGGCGUAuAGGUGCAGcAGCa -3'
miRNA:   3'- -GGGGCGaCCGCGUuUUUAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 116428 0.81 0.608288
Target:  5'- gCCCGCUGGCGCuccccgcgGCGcUGGCg -3'
miRNA:   3'- gGGGCGACCGCGuuuuua--UGUuAUCG- -5'
6487 3' -47.4 NC_001847.1 + 9030 0.78 0.752603
Target:  5'- cCCCUGCUagacgcgaugcGGCGCGAGGggGCAAUGGa -3'
miRNA:   3'- -GGGGCGA-----------CCGCGUUUUuaUGUUAUCg -5'
6487 3' -47.4 NC_001847.1 + 32046 0.78 0.752603
Target:  5'- cCCCCGCgaaagguccggGGCGCGGAGAcgGCGggGGCc -3'
miRNA:   3'- -GGGGCGa----------CCGCGUUUUUa-UGUuaUCG- -5'
6487 3' -47.4 NC_001847.1 + 11860 0.77 0.802295
Target:  5'- gCCCUGCgggcGGCGCGAGcGUAUAAaAGCc -3'
miRNA:   3'- -GGGGCGa---CCGCGUUUuUAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 71593 0.77 0.802295
Target:  5'- gCgCGCUGGCGCGGcugguGAUGCAAU-GCg -3'
miRNA:   3'- gGgGCGACCGCGUUu----UUAUGUUAuCG- -5'
6487 3' -47.4 NC_001847.1 + 122544 0.77 0.820095
Target:  5'- aCCCugccgguCGCUGGcCGCAcGAGUGCGAgGGCg -3'
miRNA:   3'- -GGG-------GCGACC-GCGUuUUUAUGUUaUCG- -5'
6487 3' -47.4 NC_001847.1 + 34931 0.76 0.838944
Target:  5'- gCCgCCGCUGGCGCAGcugcgcgGCAucgcGUGGUg -3'
miRNA:   3'- -GG-GGCGACCGCGUUuuua---UGU----UAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.