miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 5' -50.9 NC_001847.1 + 55736 0.73 0.799221
Target:  5'- gCGCCAcggUGGuccggcucgcGCCCGCGCGg -3'
miRNA:   3'- gGCGGUa--ACCuaaaaaa---CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 79131 0.74 0.773501
Target:  5'- gCCGCCA--GGAcg---UGCCCGuCGCGg -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaACGGGC-GCGC- -5'
6487 5' -50.9 NC_001847.1 + 478 0.75 0.7234
Target:  5'- gCGCCGUcaUGGG-----UGCCCGCGCc -3'
miRNA:   3'- gGCGGUA--ACCUaaaaaACGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 28173 0.77 0.596876
Target:  5'- gCGCCGUUGGGUUaccugGCggCCGCGCGc -3'
miRNA:   3'- gGCGGUAACCUAAaaaa-CG--GGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 132322 0.79 0.513711
Target:  5'- cCCGCCGgcGGAgg---UGCCgGCGCGg -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaACGGgCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 63192 0.71 0.898835
Target:  5'- gCGCCA-UGGccga---GCCCGCGCGc -3'
miRNA:   3'- gGCGGUaACCuaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 24511 0.71 0.898835
Target:  5'- aCGCCGUgGGcgUcgggGCUCGCGCGc -3'
miRNA:   3'- gGCGGUAaCCuaAaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 41260 0.7 0.934444
Target:  5'- gCUGCCAU-----UUUUUGCCgGCGCGc -3'
miRNA:   3'- -GGCGGUAaccuaAAAAACGGgCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 88900 0.7 0.933406
Target:  5'- cCCGCCGggGGcggcucccUUGCgCGCGCGc -3'
miRNA:   3'- -GGCGGUaaCCuaaaa---AACGgGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 54417 0.7 0.9313
Target:  5'- gCCGCgGUUGGccucggcgGCCCGgGCa -3'
miRNA:   3'- -GGCGgUAACCuaaaaaa-CGGGCgCGc -5'
6487 5' -50.9 NC_001847.1 + 87842 0.7 0.929152
Target:  5'- aCGCCGgcgGGcgUgaugGCCCGCGgGc -3'
miRNA:   3'- gGCGGUaa-CCuaAaaaaCGGGCGCgC- -5'
6487 5' -50.9 NC_001847.1 + 30715 0.7 0.929152
Target:  5'- gCGCUccUGGAc-----GCCCGCGCGg -3'
miRNA:   3'- gGCGGuaACCUaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 121447 0.7 0.928062
Target:  5'- aCCGCCGccGGGUUguuaaauggGUCuCGCGCGg -3'
miRNA:   3'- -GGCGGUaaCCUAAaaaa-----CGG-GCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 66150 0.7 0.928062
Target:  5'- gCGCaCGUgcUGGAcgUgcucucggccgUGCCCGCGCGg -3'
miRNA:   3'- gGCG-GUA--ACCUaaAaa---------ACGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 120086 0.7 0.926963
Target:  5'- gCCGCgCGgggcgGGAgauaaagcGCCCGCGCGu -3'
miRNA:   3'- -GGCG-GUaa---CCUaaaaaa--CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 30040 0.7 0.923602
Target:  5'- gCCGCgGccgUGGGcgacgUUGCCgGCGCGg -3'
miRNA:   3'- -GGCGgUa--ACCUaaaa-AACGGgCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 52407 0.7 0.916601
Target:  5'- gCGCCGUgcuccaGGcgcugg-GCCCGCGCGu -3'
miRNA:   3'- gGCGGUAa-----CCuaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 64138 0.7 0.911729
Target:  5'- gCCGCCGUacUGGAcaugcgGCCCGCcauGCa -3'
miRNA:   3'- -GGCGGUA--ACCUaaaaaaCGGGCG---CGc -5'
6487 5' -50.9 NC_001847.1 + 119581 0.7 0.911729
Target:  5'- gCCGCCGaUGGGggUUcc-CCCGCGCc -3'
miRNA:   3'- -GGCGGUaACCUaaAAaacGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 61939 0.71 0.902809
Target:  5'- gCGUCAgcGGcggcgcgGCCCGCGCGg -3'
miRNA:   3'- gGCGGUaaCCuaaaaaaCGGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.