miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 5' -50.9 NC_001847.1 + 121669 0.67 0.98316
Target:  5'- gCCGCCGcugUGGGgugcg-GCCCGaGCa -3'
miRNA:   3'- -GGCGGUa--ACCUaaaaaaCGGGCgCGc -5'
6487 5' -50.9 NC_001847.1 + 67834 0.67 0.98316
Target:  5'- aCGCCGgcGGGgc---UGCCgGCGCu -3'
miRNA:   3'- gGCGGUaaCCUaaaaaACGGgCGCGc -5'
6487 5' -50.9 NC_001847.1 + 37600 0.67 0.98316
Target:  5'- gCgGCCGggGGccg----GCCCGCGCu -3'
miRNA:   3'- -GgCGGUaaCCuaaaaaaCGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 80318 0.67 0.982555
Target:  5'- gCGCgGUUGuccaccaccgUGCCCGCGCu -3'
miRNA:   3'- gGCGgUAACcuaaaaa---ACGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 38624 0.67 0.981724
Target:  5'- gCGCCGUacUGGAccacggaaguccaUGCCCGcCGCGu -3'
miRNA:   3'- gGCGGUA--ACCUaaaaa--------ACGGGC-GCGC- -5'
6487 5' -50.9 NC_001847.1 + 39479 0.67 0.981082
Target:  5'- gUGCCA-UGGAgacca-GCCCGcCGCGc -3'
miRNA:   3'- gGCGGUaACCUaaaaaaCGGGC-GCGC- -5'
6487 5' -50.9 NC_001847.1 + 31367 0.67 0.981082
Target:  5'- cCCGCCGgcccGGG-----UGCCgGCGCa -3'
miRNA:   3'- -GGCGGUaa--CCUaaaaaACGGgCGCGc -5'
6487 5' -50.9 NC_001847.1 + 134180 0.67 0.981082
Target:  5'- cCCGCCGgcccGGG-----UGCCgGCGCa -3'
miRNA:   3'- -GGCGGUaa--CCUaaaaaACGGgCGCGc -5'
6487 5' -50.9 NC_001847.1 + 11244 0.67 0.981082
Target:  5'- gCCGCCGUUuucgGGAagc-UUGCCgCGgGCGc -3'
miRNA:   3'- -GGCGGUAA----CCUaaaaAACGG-GCgCGC- -5'
6487 5' -50.9 NC_001847.1 + 81444 0.67 0.981082
Target:  5'- gCCGCCGgcGGcgc----GCUCGCGCGc -3'
miRNA:   3'- -GGCGGUaaCCuaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 43501 0.67 0.981082
Target:  5'- gCCGCCGUcgaucgcuacUGGGcg----GCgCGCGCGg -3'
miRNA:   3'- -GGCGGUA----------ACCUaaaaaaCGgGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 23773 0.67 0.981082
Target:  5'- -gGCCAgcGGA-----UGCCCGgGCGc -3'
miRNA:   3'- ggCGGUaaCCUaaaaaACGGGCgCGC- -5'
6487 5' -50.9 NC_001847.1 + 100813 0.67 0.979746
Target:  5'- uUGCCAUUGcGGccgaccucgGCCCGgGCGg -3'
miRNA:   3'- gGCGGUAAC-CUaaaaaa---CGGGCgCGC- -5'
6487 5' -50.9 NC_001847.1 + 56991 0.67 0.979053
Target:  5'- cUCGCCGggUGGGUaugagccgcagGCCgGCGCGc -3'
miRNA:   3'- -GGCGGUa-ACCUAaaaaa------CGGgCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 78265 0.67 0.978818
Target:  5'- gUCGCCGgcGGGcccgUUGgCCGCGCc -3'
miRNA:   3'- -GGCGGUaaCCUaaaaAACgGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 77643 0.67 0.978818
Target:  5'- gCCGCCcgUGGAg-----GCCuuCGaCGCGg -3'
miRNA:   3'- -GGCGGuaACCUaaaaaaCGG--GC-GCGC- -5'
6487 5' -50.9 NC_001847.1 + 43381 0.67 0.978818
Target:  5'- gCCGCCGacGGAgc----GCCCGCGg- -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaaCGGGCGCgc -5'
6487 5' -50.9 NC_001847.1 + 38209 0.67 0.978818
Target:  5'- gCCGCCcgcGGAggcccgGgCCGCGCGc -3'
miRNA:   3'- -GGCGGuaaCCUaaaaaaCgGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 76419 0.67 0.978342
Target:  5'- gCCGCCGgaGGAgcccggggUGgCCGCGaCGg -3'
miRNA:   3'- -GGCGGUaaCCUaaaaa---ACgGGCGC-GC- -5'
6487 5' -50.9 NC_001847.1 + 935 0.67 0.978101
Target:  5'- aCCGCCGcccucg-----GCCCGCGCGc -3'
miRNA:   3'- -GGCGGUaaccuaaaaaaCGGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.