miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6488 3' -58.2 NC_001847.1 + 13454 0.66 0.771831
Target:  5'- aUCUAgcGGGCgCGCaccuGCUCGGGCCGc--- -3'
miRNA:   3'- -GGGU--CCCGaGCG----UGAGCCCGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 73240 0.66 0.790372
Target:  5'- -gCGGcGGCgcgggCGCGCUCGaGGCCGu--- -3'
miRNA:   3'- ggGUC-CCGa----GCGUGAGC-CCGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 134199 0.66 0.790372
Target:  5'- gCguGGaGCggCGCGCgCGGGCCGAg-- -3'
miRNA:   3'- gGguCC-CGa-GCGUGaGCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 132096 0.66 0.762368
Target:  5'- aCCCGGaGCgCGUGCUcCGGGCCGc--- -3'
miRNA:   3'- -GGGUCcCGaGCGUGA-GCCCGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 78276 0.66 0.790372
Target:  5'- gCCCGuuGGC-CGCGCcCGGGCCGc--- -3'
miRNA:   3'- -GGGUc-CCGaGCGUGaGCCCGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 114089 0.66 0.771831
Target:  5'- cCCCAGGGcCUCagggccgggGguCUCGGGgCAAg-- -3'
miRNA:   3'- -GGGUCCC-GAG---------CguGAGCCCgGUUauu -5'
6488 3' -58.2 NC_001847.1 + 5793 0.66 0.762368
Target:  5'- cCCCGGGcccggcaccgcGCUUGCGCUUGGcgcGCCGGg-- -3'
miRNA:   3'- -GGGUCC-----------CGAGCGUGAGCC---CGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 126391 0.66 0.775582
Target:  5'- cCCCGGGGCggaUGCGCUUaccuugccuuugccgGGGCUGGg-- -3'
miRNA:   3'- -GGGUCCCGa--GCGUGAG---------------CCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 18990 0.66 0.762368
Target:  5'- gCCCGcGGCcgccagCGC-CUCGGGCCGc--- -3'
miRNA:   3'- -GGGUcCCGa-----GCGuGAGCCCGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 78979 0.66 0.75279
Target:  5'- cCUCGGGGg-CGUGCUCGGGCg----- -3'
miRNA:   3'- -GGGUCCCgaGCGUGAGCCCGguuauu -5'
6488 3' -58.2 NC_001847.1 + 105957 0.66 0.762368
Target:  5'- gCCCGGcGGCgccggCgGCGCggCGGGCCGc--- -3'
miRNA:   3'- -GGGUC-CCGa----G-CGUGa-GCCCGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 13118 0.66 0.781169
Target:  5'- gCCGGGGCgCGCGggCGGcGCCGc--- -3'
miRNA:   3'- gGGUCCCGaGCGUgaGCC-CGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 84641 0.66 0.771831
Target:  5'- gCCGcGGCUgcugCGCGCUCGGG-CGAUGu -3'
miRNA:   3'- gGGUcCCGA----GCGUGAGCCCgGUUAUu -5'
6488 3' -58.2 NC_001847.1 + 90864 0.66 0.790372
Target:  5'- gCCGGGGCUgGUG-UCGaGGCCGGg-- -3'
miRNA:   3'- gGGUCCCGAgCGUgAGC-CCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 2509 0.66 0.751826
Target:  5'- gCgAGGGCcgccUCGCGCUuugcugcCGGGCCGcgGGa -3'
miRNA:   3'- gGgUCCCG----AGCGUGA-------GCCCGGUuaUU- -5'
6488 3' -58.2 NC_001847.1 + 123571 0.66 0.790372
Target:  5'- gCCGGGGC-CGcCGCgagCGgGGCCGGa-- -3'
miRNA:   3'- gGGUCCCGaGC-GUGa--GC-CCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 45504 0.66 0.790372
Target:  5'- gCCCGGGGCgggCGCcgccGC-CGGGCg----- -3'
miRNA:   3'- -GGGUCCCGa--GCG----UGaGCCCGguuauu -5'
6488 3' -58.2 NC_001847.1 + 105350 0.66 0.762368
Target:  5'- aCCCGGcGGCgcuccCGcCGC-CGGGCCGGg-- -3'
miRNA:   3'- -GGGUC-CCGa----GC-GUGaGCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 78232 0.66 0.790372
Target:  5'- uCCCGggcGGGUUCGCcCUgGaGGCCGAc-- -3'
miRNA:   3'- -GGGU---CCCGAGCGuGAgC-CCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 15408 0.66 0.790372
Target:  5'- gCCGGGuuucgGCUCGCcCUCGGcGCCu---- -3'
miRNA:   3'- gGGUCC-----CGAGCGuGAGCC-CGGuuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.