miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6488 3' -58.2 NC_001847.1 + 126926 1.07 0.001883
Target:  5'- uCCCAGGGCUCGCACUCGGGCCAAUAAu -3'
miRNA:   3'- -GGGUCCCGAGCGUGAGCCCGGUUAUU- -5'
6488 3' -58.2 NC_001847.1 + 24113 1.07 0.001883
Target:  5'- uCCCAGGGCUCGCACUCGGGCCAAUAAu -3'
miRNA:   3'- -GGGUCCCGAGCGUGAGCCCGGUUAUU- -5'
6488 3' -58.2 NC_001847.1 + 24003 0.81 0.122441
Target:  5'- uCCCAGaaUUCGCACUCGGGCUAAUAAu -3'
miRNA:   3'- -GGGUCccGAGCGUGAGCCCGGUUAUU- -5'
6488 3' -58.2 NC_001847.1 + 126816 0.81 0.122441
Target:  5'- uCCCAGaaUUCGCACUCGGGCUAAUAAu -3'
miRNA:   3'- -GGGUCccGAGCGUGAGCCCGGUUAUU- -5'
6488 3' -58.2 NC_001847.1 + 96284 0.77 0.209099
Target:  5'- aCCGGGGC-CGUACUCGgGGCCGGc-- -3'
miRNA:   3'- gGGUCCCGaGCGUGAGC-CCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 15641 0.77 0.219669
Target:  5'- cCCCuccGGGCUCGgGCUCGGGCuCGGg-- -3'
miRNA:   3'- -GGGu--CCCGAGCgUGAGCCCG-GUUauu -5'
6488 3' -58.2 NC_001847.1 + 113215 0.76 0.260293
Target:  5'- gCUCGGacuccGGCUCGCGCUCGGaGCCAGa-- -3'
miRNA:   3'- -GGGUC-----CCGAGCGUGAGCC-CGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 116418 0.74 0.321255
Target:  5'- gCCCcGGGCcgCGCGCUUGGGCuCGAg-- -3'
miRNA:   3'- -GGGuCCCGa-GCGUGAGCCCG-GUUauu -5'
6488 3' -58.2 NC_001847.1 + 16002 0.74 0.343821
Target:  5'- uUCCuGGGCUCGCACUCGGuGUa----- -3'
miRNA:   3'- -GGGuCCCGAGCGUGAGCC-CGguuauu -5'
6488 3' -58.2 NC_001847.1 + 48602 0.73 0.359487
Target:  5'- aCCUuGGGCgCGCGCUCGGccguGCCGAUGu -3'
miRNA:   3'- -GGGuCCCGaGCGUGAGCC----CGGUUAUu -5'
6488 3' -58.2 NC_001847.1 + 99070 0.73 0.374826
Target:  5'- gCCCGGGGCcgccucuUCGUGCUgGGGCCu---- -3'
miRNA:   3'- -GGGUCCCG-------AGCGUGAgCCCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 2091 0.73 0.383906
Target:  5'- cCCgCGGGGCcCGCGCggcggCGGGCCGcgAu -3'
miRNA:   3'- -GG-GUCCCGaGCGUGa----GCCCGGUuaUu -5'
6488 3' -58.2 NC_001847.1 + 104904 0.73 0.383906
Target:  5'- cCCgCGGGGCcCGCGCggcggCGGGCCGcgAu -3'
miRNA:   3'- -GG-GUCCCGaGCGUGa----GCCCGGUuaUu -5'
6488 3' -58.2 NC_001847.1 + 2941 0.73 0.392287
Target:  5'- --gAGGGCUCGCACUCcGGcGCCGu--- -3'
miRNA:   3'- gggUCCCGAGCGUGAG-CC-CGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 82918 0.73 0.399931
Target:  5'- gCCCGGGGgcuuuuuCUCGCugUCGaGGCCGc--- -3'
miRNA:   3'- -GGGUCCC-------GAGCGugAGC-CCGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 101070 0.72 0.418131
Target:  5'- cCCCGGGGC-CGcCGCggGGGCCGGg-- -3'
miRNA:   3'- -GGGUCCCGaGC-GUGagCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 30447 0.72 0.444984
Target:  5'- gCCGGGGCU-GCACgaggUGGGCCGc--- -3'
miRNA:   3'- gGGUCCCGAgCGUGa---GCCCGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 63111 0.71 0.454148
Target:  5'- cCCCGGGGCcgccgcCGCGCaCGGGUCGGUu- -3'
miRNA:   3'- -GGGUCCCGa-----GCGUGaGCCCGGUUAuu -5'
6488 3' -58.2 NC_001847.1 + 28343 0.71 0.463413
Target:  5'- cCCgCGGGGCcgCGCGCcCGGGCCc---- -3'
miRNA:   3'- -GG-GUCCCGa-GCGUGaGCCCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 131156 0.71 0.463413
Target:  5'- cCCgCGGGGCcgCGCGCcCGGGCCc---- -3'
miRNA:   3'- -GG-GUCCCGa-GCGUGaGCCCGGuuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.