miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6488 3' -58.2 NC_001847.1 + 29283 0.66 0.762368
Target:  5'- aCCCGGaGCgCGUGCUcCGGGCCGc--- -3'
miRNA:   3'- -GGGUCcCGaGCGUGA-GCCCGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 127859 0.66 0.762368
Target:  5'- gCCAGcGGCUCGUACUgCGGaGCg----- -3'
miRNA:   3'- gGGUC-CCGAGCGUGA-GCC-CGguuauu -5'
6488 3' -58.2 NC_001847.1 + 3144 0.66 0.762368
Target:  5'- gCCCGGcGGCgccggCgGCGCggCGGGCCGc--- -3'
miRNA:   3'- -GGGUC-CCGa----G-CGUGa-GCCCGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 2537 0.66 0.762368
Target:  5'- aCCCGGcGGCgcuccCGcCGC-CGGGCCGGg-- -3'
miRNA:   3'- -GGGUC-CCGa----GC-GUGaGCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 44356 0.66 0.762368
Target:  5'- gCCCGGGGCU-GCugaaCGGGCCc---- -3'
miRNA:   3'- -GGGUCCCGAgCGuga-GCCCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 14205 0.66 0.762368
Target:  5'- -gCGGGGCUgGCGgUCaGGCCGGc-- -3'
miRNA:   3'- ggGUCCCGAgCGUgAGcCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 132096 0.66 0.762368
Target:  5'- aCCCGGaGCgCGUGCUcCGGGCCGc--- -3'
miRNA:   3'- -GGGUCcCGaGCGUGA-GCCCGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 120700 0.66 0.762368
Target:  5'- -gCAGcgcGGCcgCGCGCUCGGcGCCAAa-- -3'
miRNA:   3'- ggGUC---CCGa-GCGUGAGCC-CGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 105957 0.66 0.762368
Target:  5'- gCCCGGcGGCgccggCgGCGCggCGGGCCGc--- -3'
miRNA:   3'- -GGGUC-CCGa----G-CGUGa-GCCCGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 105350 0.66 0.762368
Target:  5'- aCCCGGcGGCgcuccCGcCGC-CGGGCCGGg-- -3'
miRNA:   3'- -GGGUC-CCGa----GC-GUGaGCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 18990 0.66 0.762368
Target:  5'- gCCCGcGGCcgccagCGC-CUCGGGCCGc--- -3'
miRNA:   3'- -GGGUcCCGa-----GCGuGAGCCCGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 5793 0.66 0.762368
Target:  5'- cCCCGGGcccggcaccgcGCUUGCGCUUGGcgcGCCGGg-- -3'
miRNA:   3'- -GGGUCC-----------CGAGCGUGAGCC---CGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 66783 0.66 0.75279
Target:  5'- uUCGGGGCUCGUGCUCacgaccGGCUAc--- -3'
miRNA:   3'- gGGUCCCGAGCGUGAGc-----CCGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 44289 0.66 0.75279
Target:  5'- aCCGGcGGCgcggCGCgGCgcggCGGGCCAGc-- -3'
miRNA:   3'- gGGUC-CCGa---GCG-UGa---GCCCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 78979 0.66 0.75279
Target:  5'- cCUCGGGGg-CGUGCUCGGGCg----- -3'
miRNA:   3'- -GGGUCCCgaGCGUGAGCCCGguuauu -5'
6488 3' -58.2 NC_001847.1 + 120119 0.66 0.751826
Target:  5'- gCCCGGcggccgcGGCUCGCGCggccccacCGcGGCCGAg-- -3'
miRNA:   3'- -GGGUC-------CCGAGCGUGa-------GC-CCGGUUauu -5'
6488 3' -58.2 NC_001847.1 + 2509 0.66 0.751826
Target:  5'- gCgAGGGCcgccUCGCGCUuugcugcCGGGCCGcgGGa -3'
miRNA:   3'- gGgUCCCG----AGCGUGA-------GCCCGGUuaUU- -5'
6488 3' -58.2 NC_001847.1 + 106933 0.67 0.743104
Target:  5'- uCCCGGGcCUCGCccccaucgucCUCGGGCCc---- -3'
miRNA:   3'- -GGGUCCcGAGCGu---------GAGCCCGGuuauu -5'
6488 3' -58.2 NC_001847.1 + 24975 0.67 0.743104
Target:  5'- gUCGGGcGCUCGCugUCGcuguugauGGCCAu--- -3'
miRNA:   3'- gGGUCC-CGAGCGugAGC--------CCGGUuauu -5'
6488 3' -58.2 NC_001847.1 + 125193 0.67 0.743104
Target:  5'- cCUCGGGGCagaagGCGCcCGGGCCGc--- -3'
miRNA:   3'- -GGGUCCCGag---CGUGaGCCCGGUuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.