Results 61 - 80 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6488 | 3' | -58.2 | NC_001847.1 | + | 8170 | 0.67 | 0.70348 |
Target: 5'- --aAGGGCUCGCGgUCGuugaGGCCGGa-- -3' miRNA: 3'- gggUCCCGAGCGUgAGC----CCGGUUauu -5' |
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6488 | 3' | -58.2 | NC_001847.1 | + | 105797 | 0.67 | 0.70348 |
Target: 5'- gCCGGGGCcgCGCGCU-GGaGCCGc--- -3' miRNA: 3'- gGGUCCCGa-GCGUGAgCC-CGGUuauu -5' |
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6488 | 3' | -58.2 | NC_001847.1 | + | 70380 | 0.67 | 0.70348 |
Target: 5'- gCCGGGGCgcgagcUCGCGCU--GGCCAAg-- -3' miRNA: 3'- gGGUCCCG------AGCGUGAgcCCGGUUauu -5' |
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6488 | 3' | -58.2 | NC_001847.1 | + | 79105 | 0.67 | 0.6934 |
Target: 5'- uCCCAGGGgUCGUcgUCGcGGUCAAa-- -3' miRNA: 3'- -GGGUCCCgAGCGugAGC-CCGGUUauu -5' |
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6488 | 3' | -58.2 | NC_001847.1 | + | 32100 | 0.67 | 0.6934 |
Target: 5'- gUCGGGGCgcgaggccCGgGCUCGGGCCc---- -3' miRNA: 3'- gGGUCCCGa-------GCgUGAGCCCGGuuauu -5' |
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6488 | 3' | -58.2 | NC_001847.1 | + | 34597 | 0.67 | 0.6934 |
Target: 5'- gCCCGGGcGCUgGCGCggCGGcgcGCCGAg-- -3' miRNA: 3'- -GGGUCC-CGAgCGUGa-GCC---CGGUUauu -5' |
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6488 | 3' | -58.2 | NC_001847.1 | + | 61838 | 0.67 | 0.6934 |
Target: 5'- gCCAGGGUggugUCGUACUCcagGGGCgGGUc- -3' miRNA: 3'- gGGUCCCG----AGCGUGAG---CCCGgUUAuu -5' |
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6488 | 3' | -58.2 | NC_001847.1 | + | 134913 | 0.67 | 0.6934 |
Target: 5'- gUCGGGGCgcgaggccCGgGCUCGGGCCc---- -3' miRNA: 3'- gGGUCCCGa-------GCgUGAGCCCGGuuauu -5' |
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6488 | 3' | -58.2 | NC_001847.1 | + | 1573 | 0.68 | 0.683268 |
Target: 5'- gCCAGcacGGCgcgCGCcagcgcgccGCUCGGGCCAGc-- -3' miRNA: 3'- gGGUC---CCGa--GCG---------UGAGCCCGGUUauu -5' |
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6488 | 3' | -58.2 | NC_001847.1 | + | 103115 | 0.68 | 0.683268 |
Target: 5'- gCgGGGGCUucccCGCGCgagcgCGGGCCGc--- -3' miRNA: 3'- gGgUCCCGA----GCGUGa----GCCCGGUuauu -5' |
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6488 | 3' | -58.2 | NC_001847.1 | + | 104386 | 0.68 | 0.683268 |
Target: 5'- gCCAGcacGGCgcgCGCcagcgcgccGCUCGGGCCAGc-- -3' miRNA: 3'- gGGUC---CCGa--GCG---------UGAGCCCGGUUauu -5' |
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6488 | 3' | -58.2 | NC_001847.1 | + | 66241 | 0.68 | 0.683268 |
Target: 5'- --aAGGGCU-GCACUcucCGGGCCGAg-- -3' miRNA: 3'- gggUCCCGAgCGUGA---GCCCGGUUauu -5' |
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6488 | 3' | -58.2 | NC_001847.1 | + | 92406 | 0.68 | 0.673094 |
Target: 5'- aCCCAGGGgggCGCcagcccgaACUCGcGCCGGUAAg -3' miRNA: 3'- -GGGUCCCga-GCG--------UGAGCcCGGUUAUU- -5' |
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6488 | 3' | -58.2 | NC_001847.1 | + | 73140 | 0.68 | 0.673094 |
Target: 5'- gCCgCAGGGCccCGCGCcgcucuUCGGGCCc---- -3' miRNA: 3'- -GG-GUCCCGa-GCGUG------AGCCCGGuuauu -5' |
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6488 | 3' | -58.2 | NC_001847.1 | + | 97950 | 0.68 | 0.652654 |
Target: 5'- aCCGGGcGcCUCGCAC-CGGGCUc---- -3' miRNA: 3'- gGGUCC-C-GAGCGUGaGCCCGGuuauu -5' |
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6488 | 3' | -58.2 | NC_001847.1 | + | 74110 | 0.68 | 0.652654 |
Target: 5'- gCCCGGGGCggccgCGCccggggaugugACgcgCGGcGCCGAUGg -3' miRNA: 3'- -GGGUCCCGa----GCG-----------UGa--GCC-CGGUUAUu -5' |
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6488 | 3' | -58.2 | NC_001847.1 | + | 77252 | 0.68 | 0.652654 |
Target: 5'- gCCCGGGGCggUUGCGCccCGGGCg----- -3' miRNA: 3'- -GGGUCCCG--AGCGUGa-GCCCGguuauu -5' |
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6488 | 3' | -58.2 | NC_001847.1 | + | 6696 | 0.68 | 0.652654 |
Target: 5'- gCC-GGGCgCGCGCgcaGGGCCGAg-- -3' miRNA: 3'- gGGuCCCGaGCGUGag-CCCGGUUauu -5' |
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6488 | 3' | -58.2 | NC_001847.1 | + | 129302 | 0.68 | 0.642405 |
Target: 5'- gCCAGGcgGCUCGC-UUCGGGUgGGUGc -3' miRNA: 3'- gGGUCC--CGAGCGuGAGCCCGgUUAUu -5' |
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6488 | 3' | -58.2 | NC_001847.1 | + | 123478 | 0.68 | 0.632149 |
Target: 5'- gCCGcGGGCUCG-GCUgGGGCCGc--- -3' miRNA: 3'- gGGU-CCCGAGCgUGAgCCCGGUuauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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