miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6488 5' -46.6 NC_001847.1 + 2190 0.67 0.999312
Target:  5'- -----cUGGGCggcGUGCGGGCGCa- -3'
miRNA:   3'- ugaauaACUCGaaaCACGCUUGCGac -5'
6488 5' -46.6 NC_001847.1 + 7242 0.68 0.998703
Target:  5'- gGCUgGUcGGGUggcUGUGCGGGCGCg- -3'
miRNA:   3'- -UGAaUAaCUCGaa-ACACGCUUGCGac -5'
6488 5' -46.6 NC_001847.1 + 11762 0.73 0.959535
Target:  5'- ------cGAGgCUUUGUGUGAGCGCUc -3'
miRNA:   3'- ugaauaaCUC-GAAACACGCUUGCGAc -5'
6488 5' -46.6 NC_001847.1 + 15048 0.67 0.998944
Target:  5'- ------cGAGC--UGUGCGAGCGCc- -3'
miRNA:   3'- ugaauaaCUCGaaACACGCUUGCGac -5'
6488 5' -46.6 NC_001847.1 + 24038 1.05 0.032172
Target:  5'- uACUUAUUGAGUUUUGUGCGAACGCUGg -3'
miRNA:   3'- -UGAAUAACUCGAAACACGCUUGCGAC- -5'
6488 5' -46.6 NC_001847.1 + 24150 1.1 0.015188
Target:  5'- aACUUAUUGAGCUUUGUGCGAACGCUGg -3'
miRNA:   3'- -UGAAUAACUCGAAACACGCUUGCGAC- -5'
6488 5' -46.6 NC_001847.1 + 32809 0.67 0.999312
Target:  5'- cGCUcuUUGAGCgc-GcGCGAGCGCg- -3'
miRNA:   3'- -UGAauAACUCGaaaCaCGCUUGCGac -5'
6488 5' -46.6 NC_001847.1 + 69021 0.69 0.996075
Target:  5'- -----aUGAGCUgcugcgGUGCGucGCGCUGu -3'
miRNA:   3'- ugaauaACUCGAaa----CACGCu-UGCGAC- -5'
6488 5' -46.6 NC_001847.1 + 70526 0.68 0.998703
Target:  5'- gGCUgc-UGGGCggcGUGCuGGCGCUGg -3'
miRNA:   3'- -UGAauaACUCGaaaCACGcUUGCGAC- -5'
6488 5' -46.6 NC_001847.1 + 96346 0.67 0.998944
Target:  5'- ------cGGGCUggcGUGCGAcGCGCUGc -3'
miRNA:   3'- ugaauaaCUCGAaa-CACGCU-UGCGAC- -5'
6488 5' -46.6 NC_001847.1 + 110360 0.69 0.996075
Target:  5'- ------aGGGCgUUGUGUGGACGCUc -3'
miRNA:   3'- ugaauaaCUCGaAACACGCUUGCGAc -5'
6488 5' -46.6 NC_001847.1 + 126851 1.05 0.032172
Target:  5'- uACUUAUUGAGUUUUGUGCGAACGCUGg -3'
miRNA:   3'- -UGAAUAACUCGAAACACGCUUGCGAC- -5'
6488 5' -46.6 NC_001847.1 + 126963 1.1 0.015188
Target:  5'- aACUUAUUGAGCUUUGUGCGAACGCUGg -3'
miRNA:   3'- -UGAAUAACUCGAAACACGCUUGCGAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.