miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6489 3' -53.3 NC_001847.1 + 79265 0.66 0.964512
Target:  5'- gGCGUcGGgccGcgCGGCgaaGCGGUGCCGgUGa -3'
miRNA:   3'- -CGCA-CCa--CuaGUCG---UGUCACGGCaAC- -5'
6489 3' -53.3 NC_001847.1 + 14343 0.66 0.964512
Target:  5'- gGCGUGGUGG-CGGCGCcugcgGGgaacGCCGc-- -3'
miRNA:   3'- -CGCACCACUaGUCGUG-----UCa---CGGCaac -5'
6489 3' -53.3 NC_001847.1 + 51142 0.66 0.964512
Target:  5'- gGCGUGGcGAUCAGCagaacggggACGGcGCCu--- -3'
miRNA:   3'- -CGCACCaCUAGUCG---------UGUCaCGGcaac -5'
6489 3' -53.3 NC_001847.1 + 109372 0.66 0.964512
Target:  5'- cGCGgaaUGG-GcgCAGCugggcuGCGGUGCCGUg- -3'
miRNA:   3'- -CGC---ACCaCuaGUCG------UGUCACGGCAac -5'
6489 3' -53.3 NC_001847.1 + 32945 0.66 0.964512
Target:  5'- cGCGcGGUGcccgcggaCAGCGCGGUgGCCGa-- -3'
miRNA:   3'- -CGCaCCACua------GUCGUGUCA-CGGCaac -5'
6489 3' -53.3 NC_001847.1 + 51223 0.66 0.961005
Target:  5'- cCGUGGUGcAagaucuagcgcUCAGC-CAGUGCCa--- -3'
miRNA:   3'- cGCACCAC-U-----------AGUCGuGUCACGGcaac -5'
6489 3' -53.3 NC_001847.1 + 16801 0.66 0.957265
Target:  5'- aCGUGGcGGUCgcggagaacucgGGCAgCGGUGCCGg-- -3'
miRNA:   3'- cGCACCaCUAG------------UCGU-GUCACGGCaac -5'
6489 3' -53.3 NC_001847.1 + 85651 0.66 0.953288
Target:  5'- aGCGgcgccgaucagGGUGAUCAGCAgCAGcagcgccagGCCGgcGa -3'
miRNA:   3'- -CGCa----------CCACUAGUCGU-GUCa--------CGGCaaC- -5'
6489 3' -53.3 NC_001847.1 + 59550 0.66 0.953288
Target:  5'- gGCgGUGG-GggCGGCggggGCGGUGCCGgcGg -3'
miRNA:   3'- -CG-CACCaCuaGUCG----UGUCACGGCaaC- -5'
6489 3' -53.3 NC_001847.1 + 8584 0.66 0.953288
Target:  5'- aGCGUGGUGGUUAGcCGCGcgagcGUcaGCCGc-- -3'
miRNA:   3'- -CGCACCACUAGUC-GUGU-----CA--CGGCaac -5'
6489 3' -53.3 NC_001847.1 + 84619 0.66 0.949068
Target:  5'- aGCGccaGGUGGUcCAGCGCGaacuccuggcccGcGCCGUUGa -3'
miRNA:   3'- -CGCa--CCACUA-GUCGUGU------------CaCGGCAAC- -5'
6489 3' -53.3 NC_001847.1 + 63319 0.67 0.939889
Target:  5'- cGCGUGGU--UCAGCGCGgcGUGCUc--- -3'
miRNA:   3'- -CGCACCAcuAGUCGUGU--CACGGcaac -5'
6489 3' -53.3 NC_001847.1 + 81178 0.67 0.929707
Target:  5'- aCGUGGUGcgcGUCgAGCACAGaggcgGCCGc-- -3'
miRNA:   3'- cGCACCAC---UAG-UCGUGUCa----CGGCaac -5'
6489 3' -53.3 NC_001847.1 + 74365 0.68 0.893114
Target:  5'- cGCGUGGUGG-CGcGCGCGGUagaggcGCUGggGg -3'
miRNA:   3'- -CGCACCACUaGU-CGUGUCA------CGGCaaC- -5'
6489 3' -53.3 NC_001847.1 + 62468 0.68 0.886151
Target:  5'- cGCGUGGUGugcCAcaggcugccGCACGGUGgCGUa- -3'
miRNA:   3'- -CGCACCACua-GU---------CGUGUCACgGCAac -5'
6489 3' -53.3 NC_001847.1 + 92282 0.69 0.87895
Target:  5'- gGCGcGGUGcgCGGCuaggaAGUGCCGg-- -3'
miRNA:   3'- -CGCaCCACuaGUCGug---UCACGGCaac -5'
6489 3' -53.3 NC_001847.1 + 13744 0.69 0.871516
Target:  5'- gGCGUGGggcUGAUC-GCGCAGcgGCUGaUGg -3'
miRNA:   3'- -CGCACC---ACUAGuCGUGUCa-CGGCaAC- -5'
6489 3' -53.3 NC_001847.1 + 14771 0.69 0.863854
Target:  5'- gGCGUGGUaGcgCAGCagcucgACGGUcCCGUUGu -3'
miRNA:   3'- -CGCACCA-CuaGUCG------UGUCAcGGCAAC- -5'
6489 3' -53.3 NC_001847.1 + 97960 0.69 0.863076
Target:  5'- gGCGaggGGUGGcuguacgUCAGCACgaGGUGCCGc-- -3'
miRNA:   3'- -CGCa--CCACU-------AGUCGUG--UCACGGCaac -5'
6489 3' -53.3 NC_001847.1 + 36704 0.7 0.831066
Target:  5'- gGCGUGGUGGaggCGGCuuCGGUcGCCGccgUGa -3'
miRNA:   3'- -CGCACCACUa--GUCGu-GUCA-CGGCa--AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.