miRNA display CGI


Results 21 - 40 of 1253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6489 5' -64.1 NC_001847.1 + 92486 0.66 0.572403
Target:  5'- cGCGGCgGCGGCCucuuCGACaaagggcacgaCGUCGGCGc -3'
miRNA:   3'- cCGCUGgCGCUGGc---GCUG-----------GCGGCCGU- -5'
6489 5' -64.1 NC_001847.1 + 81545 0.66 0.572403
Target:  5'- cGGCGGCCGa-GCuCGcCGGCC-CCGcGCAg -3'
miRNA:   3'- -CCGCUGGCgcUG-GC-GCUGGcGGC-CGU- -5'
6489 5' -64.1 NC_001847.1 + 71912 0.66 0.572403
Target:  5'- cGGCgGACC-CGGCgCGCGGCgCGCgcacgcguaaaCGGCGc -3'
miRNA:   3'- -CCG-CUGGcGCUG-GCGCUG-GCG-----------GCCGU- -5'
6489 5' -64.1 NC_001847.1 + 100880 0.66 0.572403
Target:  5'- cGGCGGCaGgGG-CGCGGCCGgCGGgAg -3'
miRNA:   3'- -CCGCUGgCgCUgGCGCUGGCgGCCgU- -5'
6489 5' -64.1 NC_001847.1 + 79996 0.66 0.572403
Target:  5'- cGCGGCgGUGAcgccCCGCGcCCGCgCGGa- -3'
miRNA:   3'- cCGCUGgCGCU----GGCGCuGGCG-GCCgu -5'
6489 5' -64.1 NC_001847.1 + 130755 0.66 0.572403
Target:  5'- -aCGGCgGCGACCGUGG-CGCCGuCGa -3'
miRNA:   3'- ccGCUGgCGCUGGCGCUgGCGGCcGU- -5'
6489 5' -64.1 NC_001847.1 + 76785 0.66 0.572403
Target:  5'- aGGcCGAcgucCCGCGccugGCCGCccuCUGCUGGCAg -3'
miRNA:   3'- -CC-GCU----GGCGC----UGGCGcu-GGCGGCCGU- -5'
6489 5' -64.1 NC_001847.1 + 102693 0.66 0.572403
Target:  5'- uGGCGGgCGUGuGCUGCGGCagCGCCugGGCc -3'
miRNA:   3'- -CCGCUgGCGC-UGGCGCUG--GCGG--CCGu -5'
6489 5' -64.1 NC_001847.1 + 16240 0.66 0.572403
Target:  5'- cGGCcucGGCCcCGGCCcCGGCC-CCGGCc -3'
miRNA:   3'- -CCG---CUGGcGCUGGcGCUGGcGGCCGu -5'
6489 5' -64.1 NC_001847.1 + 29646 0.66 0.571451
Target:  5'- uGGUGGCUGCGGaCGCG-CUGCCcuucagcgcaaacGGCGu -3'
miRNA:   3'- -CCGCUGGCGCUgGCGCuGGCGG-------------CCGU- -5'
6489 5' -64.1 NC_001847.1 + 34574 0.66 0.571451
Target:  5'- cGGCGGCaGCGccuggcggcaauaAUCGCcGCgGCCGGCu -3'
miRNA:   3'- -CCGCUGgCGC-------------UGGCGcUGgCGGCCGu -5'
6489 5' -64.1 NC_001847.1 + 19373 0.66 0.562897
Target:  5'- cGGUGGCCaG-GGCCGCcGCCaucaaGCCGGUg -3'
miRNA:   3'- -CCGCUGG-CgCUGGCGcUGG-----CGGCCGu -5'
6489 5' -64.1 NC_001847.1 + 12065 0.66 0.562897
Target:  5'- uGCGgacGCCGaGGCCGCGgagcGCCGCgGGUc -3'
miRNA:   3'- cCGC---UGGCgCUGGCGC----UGGCGgCCGu -5'
6489 5' -64.1 NC_001847.1 + 3455 0.66 0.562897
Target:  5'- aGGCGGaaGuCGACagcaaGCG-CgCGCCGGCGc -3'
miRNA:   3'- -CCGCUggC-GCUGg----CGCuG-GCGGCCGU- -5'
6489 5' -64.1 NC_001847.1 + 72598 0.66 0.562897
Target:  5'- gGGCcaaaaCGCG-CUGCuGGCCGCaCGGCAc -3'
miRNA:   3'- -CCGcug--GCGCuGGCG-CUGGCG-GCCGU- -5'
6489 5' -64.1 NC_001847.1 + 14656 0.66 0.562897
Target:  5'- cGGCGcugacgugaacAUCGaCGG-CGCGGCCGgCGGCGc -3'
miRNA:   3'- -CCGC-----------UGGC-GCUgGCGCUGGCgGCCGU- -5'
6489 5' -64.1 NC_001847.1 + 48371 0.66 0.562897
Target:  5'- aGCG-UCaCGACCGUGgcGCCGCCGGg- -3'
miRNA:   3'- cCGCuGGcGCUGGCGC--UGGCGGCCgu -5'
6489 5' -64.1 NC_001847.1 + 65263 0.66 0.562897
Target:  5'- gGGC--CCGCGGCCG-GuCCGCagCGGCGg -3'
miRNA:   3'- -CCGcuGGCGCUGGCgCuGGCG--GCCGU- -5'
6489 5' -64.1 NC_001847.1 + 96554 0.66 0.562897
Target:  5'- uGCaGCCGCG-CgCGCGGuCUGCUGGCc -3'
miRNA:   3'- cCGcUGGCGCuG-GCGCU-GGCGGCCGu -5'
6489 5' -64.1 NC_001847.1 + 21357 0.66 0.562897
Target:  5'- uGCGcGCCGuCGGCgGCucgGGCCGCCucgGGCGg -3'
miRNA:   3'- cCGC-UGGC-GCUGgCG---CUGGCGG---CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.