miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
649 3' -57.9 AC_000017.1 + 11161 0.66 0.444233
Target:  5'- gUGCCCUgcaugUCUGCCGcUGCUcuugcucuuGCCGCu -3'
miRNA:   3'- -AUGGGGaua--GGACGGC-ACGGu--------UGGCG- -5'
649 3' -57.9 AC_000017.1 + 14253 0.66 0.444233
Target:  5'- -uCCCCUGgaCCcGCCGUucguGCCu-CCGCg -3'
miRNA:   3'- auGGGGAUa-GGaCGGCA----CGGuuGGCG- -5'
649 3' -57.9 AC_000017.1 + 10924 0.66 0.444233
Target:  5'- gACCCCcgGUUCgagucucggGCCG-GCCgGACUGCg -3'
miRNA:   3'- aUGGGGa-UAGGa--------CGGCaCGG-UUGGCG- -5'
649 3' -57.9 AC_000017.1 + 18616 0.66 0.424516
Target:  5'- cGCCCUagccgcgcGUCCcugcGCCGUGCCGccagcgguCCGCg -3'
miRNA:   3'- aUGGGGa-------UAGGa---CGGCACGGUu-------GGCG- -5'
649 3' -57.9 AC_000017.1 + 11224 0.66 0.405331
Target:  5'- cACCaUCUG-CC-GCCGcGUCAGCCGCg -3'
miRNA:   3'- aUGG-GGAUaGGaCGGCaCGGUUGGCG- -5'
649 3' -57.9 AC_000017.1 + 14789 0.67 0.377601
Target:  5'- aACCCCguucugCCUGCCcacuuucaaguaGUGCUccacGAUCGCg -3'
miRNA:   3'- aUGGGGaua---GGACGG------------CACGG----UUGGCG- -5'
649 3' -57.9 AC_000017.1 + 30608 0.67 0.351176
Target:  5'- aGCUCCUGauuuaggcguUCCUGCUcUGCC-GCUGCu -3'
miRNA:   3'- aUGGGGAU----------AGGACGGcACGGuUGGCG- -5'
649 3' -57.9 AC_000017.1 + 11761 0.68 0.331823
Target:  5'- aUGCCUCguUGUcCCUGCUGUGCugcacuauaagaaaCAACUGCg -3'
miRNA:   3'- -AUGGGG--AUA-GGACGGCACG--------------GUUGGCG- -5'
649 3' -57.9 AC_000017.1 + 29437 0.68 0.310119
Target:  5'- gGCgUgUGUCUUGCCuUGCCAACCugGCa -3'
miRNA:   3'- aUGgGgAUAGGACGGcACGGUUGG--CG- -5'
649 3' -57.9 AC_000017.1 + 29825 0.69 0.258262
Target:  5'- gACCCUUAuugcgcuuUUCUGCgCGUGCUccacauuGGCCGCg -3'
miRNA:   3'- aUGGGGAU--------AGGACG-GCACGG-------UUGGCG- -5'
649 3' -57.9 AC_000017.1 + 12155 0.7 0.245642
Target:  5'- gGCCUCUcuAUCgccgCUGcCCGUGCCAGCCa- -3'
miRNA:   3'- aUGGGGA--UAG----GAC-GGCACGGUUGGcg -5'
649 3' -57.9 AC_000017.1 + 24564 0.71 0.209127
Target:  5'- cUACCCCguaUUUGCCGUGCCAGaggUGCu -3'
miRNA:   3'- -AUGGGGauaGGACGGCACGGUUg--GCG- -5'
649 3' -57.9 AC_000017.1 + 2254 0.72 0.167802
Target:  5'- gGCUCUgcUCCUGCCGccGCC-GCCGCc -3'
miRNA:   3'- aUGGGGauAGGACGGCa-CGGuUGGCG- -5'
649 3' -57.9 AC_000017.1 + 26903 0.74 0.122957
Target:  5'- cGCUCCUccUCCUGCUGcUGCC-GCCGCu -3'
miRNA:   3'- aUGGGGAu-AGGACGGC-ACGGuUGGCG- -5'
649 3' -57.9 AC_000017.1 + 10682 0.74 0.118459
Target:  5'- aGCCCCgUAUCCgGCCGUccGCCGugauccaugcgguuACCGCc -3'
miRNA:   3'- aUGGGG-AUAGGaCGGCA--CGGU--------------UGGCG- -5'
649 3' -57.9 AC_000017.1 + 24628 1.1 0.000213
Target:  5'- aUACCCCUAUCCUGCCGUGCCAACCGCa -3'
miRNA:   3'- -AUGGGGAUAGGACGGCACGGUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.