miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
649 5' -62 AC_000017.1 + 16156 0.66 0.23795
Target:  5'- cGGUGGacaCUGGCg--GCGGCGuGGGCGUg -3'
miRNA:   3'- uUCGUC---GACCGgaaCGCCGU-CCCGCG- -5'
649 5' -62 AC_000017.1 + 11409 0.66 0.23795
Target:  5'- -uGCGGCaUGGCCUgaaccGCGaGCGGuugcuGCGCg -3'
miRNA:   3'- uuCGUCG-ACCGGAa----CGC-CGUCc----CGCG- -5'
649 5' -62 AC_000017.1 + 26243 0.66 0.231746
Target:  5'- -cGCGGCUgcugcugauagGGCUgcgGCGGCGGGGg-- -3'
miRNA:   3'- uuCGUCGA-----------CCGGaa-CGCCGUCCCgcg -5'
649 5' -62 AC_000017.1 + 27514 0.66 0.225678
Target:  5'- -cGCAGCUuGCgg-GCGGCuuucgucacAGGGUGCg -3'
miRNA:   3'- uuCGUCGAcCGgaaCGCCG---------UCCCGCG- -5'
649 5' -62 AC_000017.1 + 25883 0.66 0.21916
Target:  5'- uAAGCAGCUGcGaaUUGCagaccagggagcgGuGCGGGGUGCa -3'
miRNA:   3'- -UUCGUCGAC-CggAACG-------------C-CGUCCCGCG- -5'
649 5' -62 AC_000017.1 + 10354 0.66 0.213948
Target:  5'- cGGCGGC-GGCUg-GCGGUAGaGGgGCc -3'
miRNA:   3'- uUCGUCGaCCGGaaCGCCGUC-CCgCG- -5'
649 5' -62 AC_000017.1 + 25013 0.66 0.213948
Target:  5'- -cGCAGUUGGCgaUGa-GCAGcuGGCGCg -3'
miRNA:   3'- uuCGUCGACCGgaACgcCGUC--CCGCG- -5'
649 5' -62 AC_000017.1 + 5485 0.67 0.210532
Target:  5'- -cGCGGCaUGGCCcuugGCGcGCAGcuugcccuuggaggaGGCGCc -3'
miRNA:   3'- uuCGUCG-ACCGGaa--CGC-CGUC---------------CCGCG- -5'
649 5' -62 AC_000017.1 + 9101 0.67 0.206607
Target:  5'- -cGCAGgUGGUCaUGCGcGCccgcgaugccgaagGGGGCGUg -3'
miRNA:   3'- uuCGUCgACCGGaACGC-CG--------------UCCCGCG- -5'
649 5' -62 AC_000017.1 + 12178 0.67 0.202745
Target:  5'- gAGGCAGCUggGGCCggaccuggGCuGGCGGuGGCa- -3'
miRNA:   3'- -UUCGUCGA--CCGGaa------CG-CCGUC-CCGcg -5'
649 5' -62 AC_000017.1 + 15885 0.67 0.194152
Target:  5'- -cGCGGCgagacuaugcccagGGCCUUGUaaacguaggGGCAGGuGCGg -3'
miRNA:   3'- uuCGUCGa-------------CCGGAACG---------CCGUCC-CGCg -5'
649 5' -62 AC_000017.1 + 22802 0.68 0.176947
Target:  5'- aGAGCGuGCUGGCCa-GCGuGCAucacccGGCGCu -3'
miRNA:   3'- -UUCGU-CGACCGGaaCGC-CGUc-----CCGCG- -5'
649 5' -62 AC_000017.1 + 2191 0.68 0.172151
Target:  5'- cAGGCGGC-GGCg--GCGGCAGGaGCa- -3'
miRNA:   3'- -UUCGUCGaCCGgaaCGCCGUCC-CGcg -5'
649 5' -62 AC_000017.1 + 11234 0.69 0.149874
Target:  5'- gAGGagGGCgagGGCCUggcGCGGCuAGGaGCGCc -3'
miRNA:   3'- -UUCg-UCGa--CCGGAa--CGCCG-UCC-CGCG- -5'
649 5' -62 AC_000017.1 + 3859 0.7 0.123085
Target:  5'- -uGCAGC-GGCUgaagcgGCGGCGGaGGCuGCa -3'
miRNA:   3'- uuCGUCGaCCGGaa----CGCCGUC-CCG-CG- -5'
649 5' -62 AC_000017.1 + 16268 0.7 0.123085
Target:  5'- uGGGCGGCaGuGCCgggucgGCGGCGGuGGCGa -3'
miRNA:   3'- -UUCGUCGaC-CGGaa----CGCCGUC-CCGCg -5'
649 5' -62 AC_000017.1 + 15070 0.71 0.092461
Target:  5'- cAGGCGGC-GGCaacaacaGUGGCAGcGGCGCg -3'
miRNA:   3'- -UUCGUCGaCCGgaa----CGCCGUC-CCGCG- -5'
649 5' -62 AC_000017.1 + 9578 0.73 0.069156
Target:  5'- uGGCGGggGGCUgccgUGCGGCAGGGauacgGCg -3'
miRNA:   3'- uUCGUCgaCCGGa---ACGCCGUCCCg----CG- -5'
649 5' -62 AC_000017.1 + 24666 1.08 0.000097
Target:  5'- cAAGCAGCUGGCCUUGCGGCAGGGCGCu -3'
miRNA:   3'- -UUCGUCGACCGGAACGCCGUCCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.