miRNA display CGI


Results 21 - 40 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6490 3' -60.3 NC_001847.1 + 2346 0.68 0.57942
Target:  5'- gGCU---CCCGCCG-CGCCGGcCCGGCc -3'
miRNA:   3'- -CGAaucGGGCGGUgGCGGUU-GGCCGc -5'
6490 3' -60.3 NC_001847.1 + 2409 0.66 0.728114
Target:  5'- gGCcgUGGCUCGCUgcGCCGCU--UCGGCc -3'
miRNA:   3'- -CGa-AUCGGGCGG--UGGCGGuuGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 2427 0.66 0.698908
Target:  5'- ---gGGCCCcCCGCgG-CGGCCGGCa -3'
miRNA:   3'- cgaaUCGGGcGGUGgCgGUUGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 2529 0.7 0.464718
Target:  5'- uGCUgccgGGCCgCGggaCCGCUGCUcuCCGGCGg -3'
miRNA:   3'- -CGAa---UCGG-GC---GGUGGCGGuuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 2541 0.67 0.639271
Target:  5'- gGCggcGCUC-CCGCCGCCgGGCCGGgGc -3'
miRNA:   3'- -CGaauCGGGcGGUGGCGG-UUGGCCgC- -5'
6490 3' -60.3 NC_001847.1 + 2606 0.71 0.402635
Target:  5'- cGCg-AGCCCGCCG-CGCCGGaggugcuUCGGCGg -3'
miRNA:   3'- -CGaaUCGGGCGGUgGCGGUU-------GGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 2651 0.66 0.689054
Target:  5'- cGCUUGcggcGCCuuCGCCcgGCgGCuCGGCCGGCa -3'
miRNA:   3'- -CGAAU----CGG--GCGG--UGgCG-GUUGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 2762 0.7 0.455668
Target:  5'- gGCggcGCCggCGCCGgCGCCcccGCCGGCGg -3'
miRNA:   3'- -CGaauCGG--GCGGUgGCGGu--UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 2800 0.7 0.455668
Target:  5'- ---gGGCCgcgagCGCgGCCGCCAgccgcGCCGGCa -3'
miRNA:   3'- cgaaUCGG-----GCGgUGGCGGU-----UGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 2888 0.66 0.728114
Target:  5'- gGCcgGGUgCGUCGCCGUUcgGGCCGGaCGg -3'
miRNA:   3'- -CGaaUCGgGCGGUGGCGG--UUGGCC-GC- -5'
6490 3' -60.3 NC_001847.1 + 2926 0.72 0.370847
Target:  5'- ---cGGUCCG-CGCCGCCAGCgCGGCc -3'
miRNA:   3'- cgaaUCGGGCgGUGGCGGUUG-GCCGc -5'
6490 3' -60.3 NC_001847.1 + 2955 0.72 0.347587
Target:  5'- aGCgcGGCggCCGCCucggcgcgcagcGCCGCCGggGCCGGCGc -3'
miRNA:   3'- -CGaaUCG--GGCGG------------UGGCGGU--UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 3062 0.69 0.501813
Target:  5'- cGCUccgGGUgCGCCGCCaGCgCGuCCGGCGc -3'
miRNA:   3'- -CGAa--UCGgGCGGUGG-CG-GUuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 3116 0.79 0.127088
Target:  5'- ---cGGCCCGCCGCgGCCGAgagcaccgggagcCCGGCGg -3'
miRNA:   3'- cgaaUCGGGCGGUGgCGGUU-------------GGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 3189 0.77 0.185303
Target:  5'- cGCUcucGCcgCCGUCGCCGCCAucGCCGGCGc -3'
miRNA:   3'- -CGAau-CG--GGCGGUGGCGGU--UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 3227 0.66 0.708708
Target:  5'- cGCUc-GCgCGCCGCCcgcGCCGugcucGCCGGCn -3'
miRNA:   3'- -CGAauCGgGCGGUGG---CGGU-----UGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 3260 0.77 0.172117
Target:  5'- gGCaggGGCgCCGgCGCCGCgCGGCCGGCGa -3'
miRNA:   3'- -CGaa-UCG-GGCgGUGGCG-GUUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 3316 0.79 0.124215
Target:  5'- gGCgcgGGCgCCGCUGCCGCCGgcGCCGGCc -3'
miRNA:   3'- -CGaa-UCG-GGCGGUGGCGGU--UGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 3357 0.7 0.483094
Target:  5'- cGCU--GCCgGCCGCCGCaauCCGcGCGc -3'
miRNA:   3'- -CGAauCGGgCGGUGGCGguuGGC-CGC- -5'
6490 3' -60.3 NC_001847.1 + 3423 0.7 0.464718
Target:  5'- gGCUcaUGGCCaCGCagGCCGCCacGugCGGCa -3'
miRNA:   3'- -CGA--AUCGG-GCGg-UGGCGG--UugGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.