miRNA display CGI


Results 41 - 60 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6490 3' -60.3 NC_001847.1 + 32718 0.66 0.689054
Target:  5'- cGCUucaUGGagCGCCucucgGCCuCCGGCCGGCGg -3'
miRNA:   3'- -CGA---AUCggGCGG-----UGGcGGUUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 25923 0.66 0.669219
Target:  5'- ----cGCCCGCCGacCCGCCGGCgcuUGGUu -3'
miRNA:   3'- cgaauCGGGCGGU--GGCGGUUG---GCCGc -5'
6490 3' -60.3 NC_001847.1 + 45717 0.66 0.705774
Target:  5'- gGCUcAGCuCCGCCGucaugacgaagUCGCCAAuguccagcgccgggUCGGCGa -3'
miRNA:   3'- -CGAaUCG-GGCGGU-----------GGCGGUU--------------GGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 81414 0.66 0.669219
Target:  5'- cGCUacGCCgcgCGCCGauCCGCCccgcgagccGCCGGCGg -3'
miRNA:   3'- -CGAauCGG---GCGGU--GGCGGu--------UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 15626 0.66 0.708708
Target:  5'- ---cGGCCgCgGCCGCCGCCccuCCGGg- -3'
miRNA:   3'- cgaaUCGG-G-CGGUGGCGGuu-GGCCgc -5'
6490 3' -60.3 NC_001847.1 + 94219 0.66 0.679155
Target:  5'- gGCggAGCUCGCgGCggggCGCCcGCgCGGCGc -3'
miRNA:   3'- -CGaaUCGGGCGgUG----GCGGuUG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 9800 0.66 0.679155
Target:  5'- uGCgucUGGCCgGCCGCUGgcguUCAGCgCGGCu -3'
miRNA:   3'- -CGa--AUCGGgCGGUGGC----GGUUG-GCCGc -5'
6490 3' -60.3 NC_001847.1 + 15920 0.66 0.689054
Target:  5'- ----uGCCUGCC-CCGCCGcCCcGCGg -3'
miRNA:   3'- cgaauCGGGCGGuGGCGGUuGGcCGC- -5'
6490 3' -60.3 NC_001847.1 + 122480 0.66 0.695957
Target:  5'- aGCUUcGCgUCGCCguACCGCuccgagaccguguaCAGCCGGCu -3'
miRNA:   3'- -CGAAuCG-GGCGG--UGGCG--------------GUUGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 105768 0.66 0.689054
Target:  5'- aGCgcGGCggCCGCCucggcggcagcGCCGCCGggGCCGcGCGc -3'
miRNA:   3'- -CGaaUCG--GGCGG-----------UGGCGGU--UGGC-CGC- -5'
6490 3' -60.3 NC_001847.1 + 124440 0.66 0.679155
Target:  5'- cGCUUGGCCgGCgCggGCCGCgcccgggcgCGACCGGa- -3'
miRNA:   3'- -CGAAUCGGgCG-G--UGGCG---------GUUGGCCgc -5'
6490 3' -60.3 NC_001847.1 + 8531 0.66 0.679155
Target:  5'- ----cGCCCGCCuCUGUC--CCGGCGu -3'
miRNA:   3'- cgaauCGGGCGGuGGCGGuuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 8229 0.66 0.689054
Target:  5'- ---cAGCUgCGCCACgCGCUGGCCuGCGg -3'
miRNA:   3'- cgaaUCGG-GCGGUG-GCGGUUGGcCGC- -5'
6490 3' -60.3 NC_001847.1 + 53245 0.66 0.689054
Target:  5'- cGC-UGGCUgCGgCGCCGCC--UCGGCGg -3'
miRNA:   3'- -CGaAUCGG-GCgGUGGCGGuuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 123230 0.66 0.689054
Target:  5'- cGCUUGaagacgauGCCgCGCCAgCGCgGAccCCGGCc -3'
miRNA:   3'- -CGAAU--------CGG-GCGGUgGCGgUU--GGCCGc -5'
6490 3' -60.3 NC_001847.1 + 85228 0.66 0.669219
Target:  5'- ---gAGCCCGaCGaaGgCGGCCGGCGg -3'
miRNA:   3'- cgaaUCGGGCgGUggCgGUUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 117814 0.66 0.669219
Target:  5'- gGCUcggugUGGCCCugcaCCACaagaGCgGACCGGCc -3'
miRNA:   3'- -CGA-----AUCGGGc---GGUGg---CGgUUGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 105240 0.66 0.698908
Target:  5'- ---gGGCCCcCCGCgG-CGGCCGGCa -3'
miRNA:   3'- cgaaUCGGGcGGUGgCgGUUGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 40779 0.66 0.698908
Target:  5'- cGCgcGGCagaCGCCGCCGC--GCCaGCGu -3'
miRNA:   3'- -CGaaUCGg--GCGGUGGCGguUGGcCGC- -5'
6490 3' -60.3 NC_001847.1 + 129402 0.66 0.698908
Target:  5'- aGCUUGGCggcgaaCCGCC-CCGCgGGCaGGUa -3'
miRNA:   3'- -CGAAUCG------GGCGGuGGCGgUUGgCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.