miRNA display CGI


Results 41 - 60 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6490 3' -60.3 NC_001847.1 + 49418 0.78 0.163797
Target:  5'- cGCgcAGCCUGCCGCCGUgcACUGGCGc -3'
miRNA:   3'- -CGaaUCGGGCGGUGGCGguUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 95330 0.78 0.163797
Target:  5'- cGCUcgGGCCCGCCgcggacgacGCgGUCGACUGGCGg -3'
miRNA:   3'- -CGAa-UCGGGCGG---------UGgCGGUUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 19375 0.78 0.163797
Target:  5'- --gUGGCCaggGCCGCCGCCAucaaGCCGGUGu -3'
miRNA:   3'- cgaAUCGGg--CGGUGGCGGU----UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 62429 0.78 0.163797
Target:  5'- cGCgu-GCCUGCUGCCGCCcACCgGGCGg -3'
miRNA:   3'- -CGaauCGGGCGGUGGCGGuUGG-CCGC- -5'
6490 3' -60.3 NC_001847.1 + 75117 0.77 0.167911
Target:  5'- cGCUUgcccgagaaGGCCCggGCC-CCGCCGggGCCGGCGg -3'
miRNA:   3'- -CGAA---------UCGGG--CGGuGGCGGU--UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 3260 0.77 0.172117
Target:  5'- gGCaggGGCgCCGgCGCCGCgCGGCCGGCGa -3'
miRNA:   3'- -CGaa-UCG-GGCgGUGGCG-GUUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 61385 0.77 0.172117
Target:  5'- ---cGGCCCG-CGCCGCCGcCCGGCGc -3'
miRNA:   3'- cgaaUCGGGCgGUGGCGGUuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 106073 0.77 0.172117
Target:  5'- gGCaggGGCgCCGgCGCCGCgCGGCCGGCGa -3'
miRNA:   3'- -CGaa-UCG-GGCgGUGGCG-GUUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 72646 0.77 0.175982
Target:  5'- gGCUgUGGCcgccaccCCGCgGCCGCCcGCCGGCGa -3'
miRNA:   3'- -CGA-AUCG-------GGCGgUGGCGGuUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 54074 0.77 0.185303
Target:  5'- ---cAGCgCCGUCGCCGCCuucGCCGGCa -3'
miRNA:   3'- cgaaUCG-GGCGGUGGCGGu--UGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 78248 0.77 0.185303
Target:  5'- ----cGCCCGCCGgcgUCGCCGucGCCGGCGg -3'
miRNA:   3'- cgaauCGGGCGGU---GGCGGU--UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 3189 0.77 0.185303
Target:  5'- cGCUcucGCcgCCGUCGCCGCCAucGCCGGCGc -3'
miRNA:   3'- -CGAau-CG--GGCGGUGGCGGU--UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 47051 0.77 0.185303
Target:  5'- ---cAGCCgCGCCACCGCCGACagcuccaGGUGg -3'
miRNA:   3'- cgaaUCGG-GCGGUGGCGGUUGg------CCGC- -5'
6490 3' -60.3 NC_001847.1 + 118348 0.77 0.185303
Target:  5'- gGCUcuuUGGCCUGCCcgaugaccCCGCCGugCGGCGc -3'
miRNA:   3'- -CGA---AUCGGGCGGu-------GGCGGUugGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 48779 0.77 0.185303
Target:  5'- ---cGGCCCGCCGCCucgucugcgggcGCCucGCCGGCGc -3'
miRNA:   3'- cgaaUCGGGCGGUGG------------CGGu-UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 104729 0.77 0.189893
Target:  5'- ----cGCCCGCCACgaGCUuGCCGGCGg -3'
miRNA:   3'- cgaauCGGGCGGUGg-CGGuUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 85740 0.77 0.189893
Target:  5'- aGCUUGGCCgucagccccgCGCCACCcagGCCGguagucuuaguGCCGGCGa -3'
miRNA:   3'- -CGAAUCGG----------GCGGUGG---CGGU-----------UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 114454 0.76 0.194582
Target:  5'- cGCgagcGCCuCGCUuaucgGCCGCCAGCUGGCGg -3'
miRNA:   3'- -CGaau-CGG-GCGG-----UGGCGGUUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 73203 0.76 0.197925
Target:  5'- cGCgcgGGCCgCGCCGCCGCUGACgcggaggaggggggCGGCGg -3'
miRNA:   3'- -CGaa-UCGG-GCGGUGGCGGUUG--------------GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 1915 0.76 0.201317
Target:  5'- uGCgagAGCCCGCCGCgGCgCGgcggccacucgggccGCCGGCGc -3'
miRNA:   3'- -CGaa-UCGGGCGGUGgCG-GU---------------UGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.