miRNA display CGI


Results 41 - 60 of 952 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6490 3' -60.3 NC_001847.1 + 3473 0.69 0.540148
Target:  5'- uGCgcGGCCaugGCguCC-CCGACCGGCGg -3'
miRNA:   3'- -CGaaUCGGg--CGguGGcGGUUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 3668 0.66 0.689054
Target:  5'- aGCcauGCCagcagGCCGCCGCgAGCCuGCGc -3'
miRNA:   3'- -CGaauCGGg----CGGUGGCGgUUGGcCGC- -5'
6490 3' -60.3 NC_001847.1 + 3706 0.66 0.669219
Target:  5'- gGCcgcgGGcCCCGCgGCCGCCGcguagcGCgCGGCc -3'
miRNA:   3'- -CGaa--UC-GGGCGgUGGCGGU------UG-GCCGc -5'
6490 3' -60.3 NC_001847.1 + 3786 0.67 0.609273
Target:  5'- ----cGCCCG-CGCCGCCGaagcgcacgcgGCCgGGCGg -3'
miRNA:   3'- cgaauCGGGCgGUGGCGGU-----------UGG-CCGC- -5'
6490 3' -60.3 NC_001847.1 + 3828 0.72 0.362977
Target:  5'- cGCUgccgGGCCaCGCC-UCGCCAGaaGGCGu -3'
miRNA:   3'- -CGAa---UCGG-GCGGuGGCGGUUggCCGC- -5'
6490 3' -60.3 NC_001847.1 + 3878 0.66 0.679155
Target:  5'- gGCggcGGCCCGUCGCgcggCGCCG--CGGCGu -3'
miRNA:   3'- -CGaa-UCGGGCGGUG----GCGGUugGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 3938 0.67 0.619265
Target:  5'- cGC-UGGCgCCGCgGCggggggggCGCCGucuCCGGCGg -3'
miRNA:   3'- -CGaAUCG-GGCGgUG--------GCGGUu--GGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 4272 0.66 0.669219
Target:  5'- cGCUUcggccuugaggGGCgCCGCCcCCGCC--UCGGCu -3'
miRNA:   3'- -CGAA-----------UCG-GGCGGuGGCGGuuGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 4325 0.67 0.629267
Target:  5'- uGCgggUAGUgcuCCGCCAUguagggCGCCAGCuCGGCc -3'
miRNA:   3'- -CGa--AUCG---GGCGGUG------GCGGUUG-GCCGc -5'
6490 3' -60.3 NC_001847.1 + 4332 0.71 0.420453
Target:  5'- cGCUUcGgCCGCgGCCGCCuccgccCCGGCc -3'
miRNA:   3'- -CGAAuCgGGCGgUGGCGGuu----GGCCGc -5'
6490 3' -60.3 NC_001847.1 + 4395 0.67 0.649269
Target:  5'- cGCcacGgUCGCCGCCGUCGACgccgaCGGCGg -3'
miRNA:   3'- -CGaauCgGGCGGUGGCGGUUG-----GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 4612 0.67 0.639271
Target:  5'- aGCUcGGCCaGCUcggcgcggGCgGCCcGCCGGCGc -3'
miRNA:   3'- -CGAaUCGGgCGG--------UGgCGGuUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 4889 0.71 0.426497
Target:  5'- gGCagGGCCCccgcGCCGCUGCgAacgacaccgaccgcGCCGGCGg -3'
miRNA:   3'- -CGaaUCGGG----CGGUGGCGgU--------------UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 5199 0.68 0.559688
Target:  5'- ---aAGCCCucGCCggcucucucGCCGCggCGGCCGGCGg -3'
miRNA:   3'- cgaaUCGGG--CGG---------UGGCG--GUUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 5643 0.66 0.728114
Target:  5'- cGCgccaaagAGCCCGUCcagcggaugcgcGCCGUCGcGCgCGGCGg -3'
miRNA:   3'- -CGaa-----UCGGGCGG------------UGGCGGU-UG-GCCGC- -5'
6490 3' -60.3 NC_001847.1 + 5674 0.68 0.559688
Target:  5'- cGCgaaggugGGCCgGCCgggGCCGCCcaGACCcGGCa -3'
miRNA:   3'- -CGaa-----UCGGgCGG---UGGCGG--UUGG-CCGc -5'
6490 3' -60.3 NC_001847.1 + 6343 0.66 0.697925
Target:  5'- uGCgc-GCCCGCCcgcCCGCCcuggucuGACCGcccGCGg -3'
miRNA:   3'- -CGaauCGGGCGGu--GGCGG-------UUGGC---CGC- -5'
6490 3' -60.3 NC_001847.1 + 6530 0.66 0.728114
Target:  5'- ---aAGCCUggGCCACaGCCG-CCGGUGc -3'
miRNA:   3'- cgaaUCGGG--CGGUGgCGGUuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 6613 0.66 0.718447
Target:  5'- cGCUguuggAGUaaaGCCGCCGgUAGgCGGCGa -3'
miRNA:   3'- -CGAa----UCGgg-CGGUGGCgGUUgGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 6677 0.72 0.370847
Target:  5'- gGC-UAGgCCGCgGCgGCCGGCCgGGCGc -3'
miRNA:   3'- -CGaAUCgGGCGgUGgCGGUUGG-CCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.