miRNA display CGI


Results 41 - 60 of 952 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6490 3' -60.3 NC_001847.1 + 31436 0.66 0.728114
Target:  5'- ---cGGCCgGCgGCCGCgGcggccCCGGCGc -3'
miRNA:   3'- cgaaUCGGgCGgUGGCGgUu----GGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 83197 0.66 0.708708
Target:  5'- cGCggGGUCgCGCgGCCGUCGcgccCCGGCc -3'
miRNA:   3'- -CGaaUCGG-GCGgUGGCGGUu---GGCCGc -5'
6490 3' -60.3 NC_001847.1 + 26589 0.66 0.698908
Target:  5'- aGCUUGGCggcgaaCCGCC-CCGCgGGCaGGUa -3'
miRNA:   3'- -CGAAUCG------GGCGGuGGCGgUUGgCCGc -5'
6490 3' -60.3 NC_001847.1 + 27693 0.66 0.698908
Target:  5'- gGCUgaGGCgCGCgAgCGCCGGCgGGCc -3'
miRNA:   3'- -CGAa-UCGgGCGgUgGCGGUUGgCCGc -5'
6490 3' -60.3 NC_001847.1 + 131405 0.66 0.708708
Target:  5'- aGCgcuGCaCgGCCGCgugcgCGCCGugGCCGGCGc -3'
miRNA:   3'- -CGaauCG-GgCGGUG-----GCGGU--UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 36120 0.66 0.718447
Target:  5'- gGCgguGCUCGCCGCCcgaggcagcGCUGugguacgaggacACCGGCGa -3'
miRNA:   3'- -CGaauCGGGCGGUGG---------CGGU------------UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 65910 0.66 0.728114
Target:  5'- ---aGGCCagCGUUGCCGCgGcGCCGGCGa -3'
miRNA:   3'- cgaaUCGG--GCGGUGGCGgU-UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 78095 0.66 0.728114
Target:  5'- aGCUUAG-CCGCCuCgGCCcACagGGCGc -3'
miRNA:   3'- -CGAAUCgGGCGGuGgCGGuUGg-CCGC- -5'
6490 3' -60.3 NC_001847.1 + 56457 0.66 0.718447
Target:  5'- uGCU--GCCCGgCACCagcGCCcgcgugcgcacGCCGGCGa -3'
miRNA:   3'- -CGAauCGGGCgGUGG---CGGu----------UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 49903 0.66 0.708708
Target:  5'- cGCgcaccUGGCgCCGCCgGCCGCCuucguCgGGCu -3'
miRNA:   3'- -CGa----AUCG-GGCGG-UGGCGGuu---GgCCGc -5'
6490 3' -60.3 NC_001847.1 + 96933 0.66 0.708708
Target:  5'- cGCguaUAGCggGUCGCCGCUAG-CGGCGg -3'
miRNA:   3'- -CGa--AUCGggCGGUGGCGGUUgGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 129214 0.66 0.718447
Target:  5'- cGCUU-GCUCGCggcgACCGCUAAUgGGCc -3'
miRNA:   3'- -CGAAuCGGGCGg---UGGCGGUUGgCCGc -5'
6490 3' -60.3 NC_001847.1 + 1219 0.66 0.728114
Target:  5'- aGCUccAGCgCgCGCCGCCcgcagGCCAgguacACCGGCc -3'
miRNA:   3'- -CGAa-UCG-G-GCGGUGG-----CGGU-----UGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 119355 0.66 0.698908
Target:  5'- cGCcu--CCCGCCGCgcggcgcuUGCCG-CCGGCGa -3'
miRNA:   3'- -CGaaucGGGCGGUG--------GCGGUuGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 60972 0.66 0.707731
Target:  5'- cGCggcaugGGCCCcacGCCgagaggcGCCGCCAucauucgccCCGGCGc -3'
miRNA:   3'- -CGaa----UCGGG---CGG-------UGGCGGUu--------GGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 3227 0.66 0.708708
Target:  5'- cGCUc-GCgCGCCGCCcgcGCCGugcucGCCGGCn -3'
miRNA:   3'- -CGAauCGgGCGGUGG---CGGU-----UGGCCGc -5'
6490 3' -60.3 NC_001847.1 + 30368 0.66 0.698908
Target:  5'- cGCUggcGGCgCCGCC-CgGCgAggacgagcGCCGGCGg -3'
miRNA:   3'- -CGAa--UCG-GGCGGuGgCGgU--------UGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 19875 1.1 0.00082
Target:  5'- gGCUUAGCCCGCCACCGCCAACCGGCGg -3'
miRNA:   3'- -CGAAUCGGGCGGUGGCGGUUGGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 103843 0.66 0.698908
Target:  5'- aGCagAGCCCGCUccccgcgcCCGCCuggUCGGUGa -3'
miRNA:   3'- -CGaaUCGGGCGGu-------GGCGGuu-GGCCGC- -5'
6490 3' -60.3 NC_001847.1 + 74647 0.66 0.698908
Target:  5'- ---aGGCCCGCCGgcCCGCgcgcgcacaAAgCGGCGg -3'
miRNA:   3'- cgaaUCGGGCGGU--GGCGg--------UUgGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.